Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COPB1P53618 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
COPB1P53618 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.78■□□□□ 0.92
COPB1P53618 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.78■□□□□ 0.92
COPB1P53618 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 KRT8P41-201ENST00000533985 1514 ntBASIC20.78■□□□□ 0.92
COPB1P53618 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COPB1P53618 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
COPB1P53618 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.77■□□□□ 0.92
COPB1P53618 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COPB1P53618 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.77■□□□□ 0.92
COPB1P53618 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.77■□□□□ 0.92
COPB1P53618 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COPB1P53618 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COPB1P53618 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.77■□□□□ 0.92
COPB1P53618 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.77■□□□□ 0.92
COPB1P53618 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.77■□□□□ 0.91
COPB1P53618 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COPB1P53618 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COPB1P53618 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.77■□□□□ 0.91
COPB1P53618 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.77■□□□□ 0.91
COPB1P53618 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.77■□□□□ 0.91
COPB1P53618 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
COPB1P53618 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COPB1P53618 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.76■□□□□ 0.91
COPB1P53618 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.76■□□□□ 0.91
COPB1P53618 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.76■□□□□ 0.91
COPB1P53618 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.76■□□□□ 0.91
COPB1P53618 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 AC026471.1-201ENST00000564629 3026 ntBASIC20.76■□□□□ 0.91
COPB1P53618 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COPB1P53618 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.76■□□□□ 0.91
COPB1P53618 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.76■□□□□ 0.91
COPB1P53618 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.76■□□□□ 0.91
COPB1P53618 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COPB1P53618 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.75■□□□□ 0.91
COPB1P53618 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.75■□□□□ 0.91
COPB1P53618 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 AC018470.1-201ENST00000624790 3129 ntBASIC20.75■□□□□ 0.91
COPB1P53618 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.75■□□□□ 0.91
COPB1P53618 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.75■□□□□ 0.91
COPB1P53618 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.75■□□□□ 0.91
COPB1P53618 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 AC004264.1-201ENST00000608354 794 ntBASIC20.75■□□□□ 0.91
COPB1P53618 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COPB1P53618 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.75■□□□□ 0.91
COPB1P53618 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COPB1P53618 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.75■□□□□ 0.91
COPB1P53618 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COPB1P53618 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
COPB1P53618 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COPB1P53618 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COPB1P53618 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COPB1P53618 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COPB1P53618 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms