Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 RNU6-109P-201ENST00000516364 107 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 RNU6-184P-201ENST00000516514 107 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 SNORA31.16-201ENST00000516773 139 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 RNA5SP230-201ENST00000517039 122 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 IGKV1-22-201ENST00000524313 326 ntBASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 FTX-210ENST00000603037 8347 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC61Q9Y6R9 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 RN7SKP280-201ENST00000364196 304 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 GEMIN8P3-201ENST00000445417 720 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 TDGF1P1-201ENST00000445734 527 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 AC125238.1-201ENST00000448842 249 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 AC012308.1-201ENST00000451232 178 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 RN7SL691P-201ENST00000494487 301 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 AP001005.3-201ENST00000622049 129 ntBASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
CCDC61Q9Y6R9 AC118273.1-201ENST00000525324 3006 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 AC106871.1-201ENST00000568324 3102 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 MIR383-201ENST00000362257 73 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 RNY1P10-201ENST00000363268 113 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 SNORA63.5-201ENST00000363548 123 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 SNORD87-201ENST00000364849 89 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 RNU1-100P-201ENST00000365255 165 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 RNU6-178P-201ENST00000384631 104 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 MIR518C-201ENST00000384822 101 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 MIR590-201ENST00000385008 97 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 MIR134-201ENST00000385258 73 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 RNU6-972P-201ENST00000391208 107 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 RN7SKP101-201ENST00000411376 320 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 SNORA31.23-201ENST00000517219 133 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 AC090132.2-201ENST00000615881 347 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 MIR8059-201ENST00000620427 81 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 AC140479.6-201ENST00000633535 357 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 AC068205.3-201ENST00000636385 468 ntBASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
CCDC61Q9Y6R9 CARF-208ENST00000428585 2513 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 ADAM3A-203ENST00000461344 2157 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 AL513302.2-201ENST00000562313 1842 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 RNU1-64P-201ENST00000365443 163 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 RPL23AP52-201ENST00000439311 478 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 AC010531.2-201ENST00000465012 153 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 AC090525.1-201ENST00000479116 478 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 AC023424.1-201ENST00000496058 459 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 SNORA18.4-201ENST00000516440 124 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 RNU6-344P-201ENST00000516635 111 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 IGHVIII-2-1-201ENST00000518843 291 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 AC099778.2-201ENST00000610904 211 ntBASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC61Q9Y6R9 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 RNU1-94P-201ENST00000362627 173 ntBASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 Y_RNA.52-201ENST00000362760 96 ntBASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 AP002088.1-201ENST00000382740 395 ntBASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 PGBD4P5-201ENST00000445958 426 ntBASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 AC027176.1-201ENST00000560204 514 ntBASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 MIR3529-201ENST00000637713 78 ntBASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC61Q9Y6R9 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC61Q9Y6R9 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 250.1 ms