Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SSX3Q99909 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC20.93■□□□□ 0.94
SSX3Q99909 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.93■□□□□ 0.94
SSX3Q99909 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.93■□□□□ 0.94
SSX3Q99909 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.93■□□□□ 0.94
SSX3Q99909 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SSX3Q99909 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SSX3Q99909 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.92■□□□□ 0.94
SSX3Q99909 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SSX3Q99909 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.92■□□□□ 0.94
SSX3Q99909 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SSX3Q99909 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SSX3Q99909 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SSX3Q99909 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SSX3Q99909 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SSX3Q99909 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.91■□□□□ 0.94
SSX3Q99909 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SSX3Q99909 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.91■□□□□ 0.94
SSX3Q99909 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.91■□□□□ 0.94
SSX3Q99909 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.91■□□□□ 0.94
SSX3Q99909 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSX3Q99909 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSX3Q99909 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSX3Q99909 MIR3648-2-201ENST00000581792 180 ntBASIC20.9■□□□□ 0.94
SSX3Q99909 MIR3648-1-201ENST00000615959 180 ntBASIC20.9■□□□□ 0.94
SSX3Q99909 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSX3Q99909 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.9■□□□□ 0.94
SSX3Q99909 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SSX3Q99909 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.89■□□□□ 0.94
SSX3Q99909 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SSX3Q99909 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.89■□□□□ 0.93
SSX3Q99909 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSX3Q99909 AC127502.1-201ENST00000399971 1502 ntBASIC20.88■□□□□ 0.93
SSX3Q99909 LINC00273-201ENST00000539813 1452 ntBASIC20.88■□□□□ 0.93
SSX3Q99909 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.88■□□□□ 0.93
SSX3Q99909 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.88■□□□□ 0.93
SSX3Q99909 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX3Q99909 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX3Q99909 AC016575.1-201ENST00000607026 382 ntBASIC20.88■□□□□ 0.93
SSX3Q99909 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.88■□□□□ 0.93
SSX3Q99909 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SSX3Q99909 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX3Q99909 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSX3Q99909 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.87■□□□□ 0.93
SSX3Q99909 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.86■□□□□ 0.93
SSX3Q99909 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.86■□□□□ 0.93
SSX3Q99909 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SSX3Q99909 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX3Q99909 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.86■□□□□ 0.93
SSX3Q99909 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.86■□□□□ 0.93
SSX3Q99909 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX3Q99909 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SSX3Q99909 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX3Q99909 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.85■□□□□ 0.93
SSX3Q99909 CR559946.2-201ENST00000623684 991 ntBASIC20.85■□□□□ 0.93
SSX3Q99909 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SSX3Q99909 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L13-201ENST00000554103 1267 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L15-201ENST00000611059 1267 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L23-201ENST00000615195 1269 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L24-201ENST00000617576 1269 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L22-201ENST00000618238 1269 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L20-201ENST00000619712 1269 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L21-201ENST00000622058 1269 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L10-201ENST00000622460 1267 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 DUX4L25-201ENST00000624915 1269 ntBASIC20.84■□□□□ 0.93
SSX3Q99909 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX3Q99909 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.84■□□□□ 0.93
SSX3Q99909 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SSX3Q99909 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX3Q99909 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX3Q99909 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SSX3Q99909 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.83■□□□□ 0.93
SSX3Q99909 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.83■□□□□ 0.93
SSX3Q99909 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SSX3Q99909 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX3Q99909 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX3Q99909 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX3Q99909 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SSX3Q99909 MIR639-201ENST00000384974 98 ntBASIC20.82■□□□□ 0.92
SSX3Q99909 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SSX3Q99909 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX3Q99909 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
SSX3Q99909 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SSX3Q99909 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SSX3Q99909 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
SSX3Q99909 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SSX3Q99909 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SSX3Q99909 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SSX3Q99909 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SSX3Q99909 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SSX3Q99909 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SSX3Q99909 ST7-AS1-201ENST00000456775 1889 ntBASIC20.79■□□□□ 0.92
SSX3Q99909 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.78■□□□□ 0.92
SSX3Q99909 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX3Q99909 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.78■□□□□ 0.92
SSX3Q99909 AC142086.6-201ENST00000621154 1765 ntBASIC20.78■□□□□ 0.92
SSX3Q99909 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX3Q99909 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SSX3Q99909 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms