Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 EHMT1-201ENST00000371394 2679 ntTSL 216.16■□□□□ 0.181e-8■■■■■ 27.1
YBX3P16989 C1orf174-202ENST00000474140 3499 ntTSL 514.94□□□□□ -0.021e-8■■■■■ 27.1
YBX3P16989 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.051e-8■■■■■ 27.1
YBX3P16989 EHMT1-228ENST00000636027 3114 ntTSL 511.95□□□□□ -0.51e-8■■■■■ 27.1
YBX3P16989 EHMT1-206ENST00000465566 503 ntTSL 310.5□□□□□ -0.731e-8■■■■■ 27.1
YBX3P16989 RPRD1A-205ENST00000587563 643 ntTSL 39.2□□□□□ -0.941e-8■■■■■ 27.1
YBX3P16989 RPRD1A-203ENST00000585879 425 ntTSL 38.82□□□□□ -11e-8■■■■■ 27.1
YBX3P16989 HDLBP-218ENST00000441124 708 ntTSL 226.6■■□□□ 1.852e-12■■■■■ 27.1
YBX3P16989 HDLBP-217ENST00000430918 612 ntTSL 314.07□□□□□ -0.162e-12■■■■■ 27.1
YBX3P16989 HDLBP-221ENST00000444092 598 ntTSL 213.86□□□□□ -0.192e-12■■■■■ 27.1
YBX3P16989 LYPLA1-211ENST00000521856 764 ntTSL 210.6□□□□□ -0.712e-8■■■■■ 27.1
YBX3P16989 FLII-229ENST00000584444 782 ntTSL 315.74■□□□□ 0.111e-6■■■■■ 27
YBX3P16989 AAMP-210ENST00000494720 1134 ntTSL 230.64■■■□□ 2.53e-9■■■■■ 27
YBX3P16989 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.443e-9■■■■■ 27
YBX3P16989 AAMP-203ENST00000422731 742 ntTSL 317.65■□□□□ 0.423e-9■■■■■ 27
YBX3P16989 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.56■□□□□ 0.43e-9■■■■■ 27
YBX3P16989 AAMP-208ENST00000475678 2270 ntTSL 216.84■□□□□ 0.293e-9■■■■■ 27
YBX3P16989 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.273e-9■■■■■ 27
YBX3P16989 AAMP-209ENST00000489767 1833 ntTSL 516.76■□□□□ 0.273e-9■■■■■ 27
YBX3P16989 PSMD5-201ENST00000210313 3443 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.248e-7■■■■■ 27
YBX3P16989 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.092e-6■■■■■ 27
YBX3P16989 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.012e-6■■■■■ 27
YBX3P16989 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.453e-6■■■■■ 26.9
YBX3P16989 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.143e-6■■■■■ 26.9
YBX3P16989 NEK7-206ENST00000493790 1021 ntTSL 29.31□□□□□ -0.923e-6■■■■■ 26.9
YBX3P16989 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.224e-9■■■■■ 26.9
YBX3P16989 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC13.77□□□□□ -0.24e-9■■■■■ 26.9
YBX3P16989 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.78□□□□□ -1.644e-9■■■■■ 26.9
YBX3P16989 GUSB-206ENST00000461622 491 ntTSL 1 (best)3.93□□□□□ -1.789e-7■■■■■ 26.9
YBX3P16989 TMEM33-201ENST00000264452 1570 ntTSL 1 (best)24.75■■□□□ 1.555e-7■■■■■ 26.8
YBX3P16989 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.785e-7■■■■■ 26.8
YBX3P16989 TMEM33-205ENST00000508448 867 ntTSL 514.63□□□□□ -0.075e-7■■■■■ 26.8
YBX3P16989 TMEM33-206ENST00000510383 697 ntTSL 314.52□□□□□ -0.095e-7■■■■■ 26.8
YBX3P16989 TMEM33-204ENST00000506794 574 ntTSL 512.41□□□□□ -0.425e-7■■■■■ 26.8
YBX3P16989 ANXA2-233ENST00000560468 663 ntTSL 513.07□□□□□ -0.321e-10■■■■■ 26.8
YBX3P16989 COPB2-210ENST00000512309 565 ntTSL 58.44□□□□□ -1.064e-7■■■■■ 26.8
YBX3P16989 WDR82-204ENST00000487402 4333 ntTSL 210.44□□□□□ -0.741e-12■■■■■ 26.8
YBX3P16989 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.71■□□□□ 0.912e-7■■■■■ 26.8
YBX3P16989 HCFC1-203ENST00000444191 3624 ntTSL 511.84□□□□□ -0.513e-9■■■■■ 26.8
YBX3P16989 NDUFA3-210ENST00000471292 646 ntTSL 2 BASIC13.36□□□□□ -0.277e-16■■■■□ 26.7
YBX3P16989 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC26.92■■□□□ 1.91e-6■■■■□ 26.7
YBX3P16989 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.511e-6■■■■□ 26.7
YBX3P16989 DGCR6L-203ENST00000443409 935 ntTSL 1 (best)21.67■■□□□ 1.061e-6■■■■□ 26.7
YBX3P16989 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.273e-7■■■■□ 26.7
YBX3P16989 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.273e-7■■■■□ 26.7
YBX3P16989 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.463e-7■■■■□ 26.7
YBX3P16989 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC11.2□□□□□ -0.623e-7■■■■□ 26.7
YBX3P16989 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC10.18□□□□□ -0.783e-7■■■■□ 26.7
YBX3P16989 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC9.25□□□□□ -0.933e-7■■■■□ 26.7
YBX3P16989 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.72■□□□□ 0.915e-7■■■■□ 26.7
YBX3P16989 TOM1-205ENST00000424387 2211 ntTSL 518.31■□□□□ 0.525e-7■■■■□ 26.7
YBX3P16989 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.19■□□□□ 0.55e-7■■■■□ 26.7
YBX3P16989 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.415e-7■■■■□ 26.7
YBX3P16989 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.375e-7■■■■□ 26.7
YBX3P16989 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.23■□□□□ 0.355e-7■■■■□ 26.7
YBX3P16989 TOM1-203ENST00000404284 2622 ntTSL 215.93■□□□□ 0.145e-7■■■■□ 26.7
YBX3P16989 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.97□□□□□ -0.019e-11■■■■□ 26.7
YBX3P16989 PIK3R4-201ENST00000356763 5015 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.566e-7■■■■□ 26.6
YBX3P16989 SUPT6H-209ENST00000583972 1969 ntTSL 215.08■□□□□ 02e-8■■■■□ 26.6
YBX3P16989 MAPKAP1-211ENST00000433483 769 ntTSL 528.39■■■□□ 2.142e-8■■■■□ 26.6
YBX3P16989 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.84■□□□□ 0.452e-8■■■■□ 26.6
YBX3P16989 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.292e-8■■■■□ 26.6
YBX3P16989 NOLC1-203ENST00000461421 777 ntTSL 38.09□□□□□ -1.116e-7■■■■□ 26.6
YBX3P16989 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.771e-7■■■■□ 26.5
YBX3P16989 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.751e-7■■■■□ 26.5
YBX3P16989 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC16.62■□□□□ 0.251e-7■■■■□ 26.5
YBX3P16989 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC16.38■□□□□ 0.212e-22■■■■□ 26.5
YBX3P16989 RTEL1-210ENST00000496816 2222 ntTSL 1 (best)20.25■□□□□ 0.831e-7■■■■□ 26.5
YBX3P16989 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.55■□□□□ 0.721e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-204ENST00000496281 5314 ntTSL 218.36■□□□□ 0.531e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-201ENST00000480273 5751 ntTSL 217.4■□□□□ 0.381e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.02■□□□□ 0.321e-7■■■■□ 26.5
YBX3P16989 RTEL1-TNFRSF6B-203ENST00000492259 4824 ntAPPRIS ALT2 TSL 515.33■□□□□ 0.051e-7■■■■□ 26.5
YBX3P16989 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.26■□□□□ 0.031e-7■■■■□ 26.5
YBX3P16989 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC15.14■□□□□ 0.011e-7■■■■□ 26.5
YBX3P16989 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.031e-7■■■■□ 26.5
YBX3P16989 RTEL1-211ENST00000508582 4273 ntTSL 2 BASIC13.2□□□□□ -0.31e-7■■■■□ 26.5
YBX3P16989 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.12■■□□□ 1.612e-6■■■■□ 26.4
YBX3P16989 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.78■□□□□ 0.62e-6■■■■□ 26.4
YBX3P16989 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.482e-6■■■■□ 26.4
YBX3P16989 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.98■□□□□ 0.472e-6■■■■□ 26.4
YBX3P16989 VARS-222ENST00000470953 392 ntTSL 39.41□□□□□ -0.92e-9■■■■□ 26.4
YBX3P16989 POLD1-213ENST00000601098 783 ntTSL 322.84■■□□□ 1.256e-11■■■■□ 26.4
YBX3P16989 POLD1-211ENST00000600746 999 ntTSL 522.52■■□□□ 1.26e-11■■■■□ 26.4
YBX3P16989 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.183e-7■■■■□ 26.4
YBX3P16989 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC11.95□□□□□ -0.53e-7■■■■□ 26.4
YBX3P16989 MAPK9-204ENST00000393362 1344 ntTSL 544.35■■■■■ 4.697e-7■■■■□ 26.4
YBX3P16989 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.59■■■□□ 2.817e-7■■■■□ 26.4
YBX3P16989 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC26.1■■□□□ 1.777e-7■■■■□ 26.4
YBX3P16989 MAPK9-205ENST00000397072 1416 ntTSL 1 (best) BASIC14.26□□□□□ -0.137e-7■■■■□ 26.4
YBX3P16989 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC8.37□□□□□ -1.077e-7■■■■□ 26.4
YBX3P16989 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.443e-7■■■■□ 26.4
YBX3P16989 S100A13-206ENST00000491177 2184 ntTSL 216.78■□□□□ 0.283e-7■■■■□ 26.4
YBX3P16989 S100A13-205ENST00000476133 710 ntTSL 1 (best)12.64□□□□□ -0.393e-7■■■■□ 26.4
YBX3P16989 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.463e-7■■■■□ 26.4
YBX3P16989 S100A13-204ENST00000440685 686 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.683e-7■■■■□ 26.4
YBX3P16989 S100A13-201ENST00000339556 514 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.823e-7■■■■□ 26.4
YBX3P16989 CSAG1-201ENST00000361211 630 ntTSL 1 (best)19.48■□□□□ 0.713e-7■■■■□ 26.4
YBX3P16989 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.713e-7■■■■□ 26.4
YBX3P16989 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.453e-7■■■■□ 26.4
Retrieved 100 of 29,075 protein–RNA pairs in 372.3 ms