Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.06■■□□□ 1.44
CPSF4O95639 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CPSF4O95639 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CPSF4O95639 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CPSF4O95639 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.06■■□□□ 1.44
CPSF4O95639 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.06■■□□□ 1.44
CPSF4O95639 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CPSF4O95639 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.05■■□□□ 1.44
CPSF4O95639 MIR6090-201ENST00000622481 60 ntBASIC24.05■■□□□ 1.44
CPSF4O95639 DUX4L28-201ENST00000623687 678 ntBASIC24.05■■□□□ 1.44
CPSF4O95639 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.05■■□□□ 1.44
CPSF4O95639 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
CPSF4O95639 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
CPSF4O95639 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CPSF4O95639 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.04■■□□□ 1.44
CPSF4O95639 AP002414.2-202ENST00000590929 1450 ntBASIC24.03■■□□□ 1.44
CPSF4O95639 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CPSF4O95639 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.02■■□□□ 1.44
CPSF4O95639 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CPSF4O95639 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CPSF4O95639 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CPSF4O95639 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.02■■□□□ 1.44
CPSF4O95639 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CPSF4O95639 AC135983.2-203ENST00000454486 1613 ntBASIC24.02■■□□□ 1.44
CPSF4O95639 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.01■■□□□ 1.43
CPSF4O95639 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CPSF4O95639 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.01■■□□□ 1.43
CPSF4O95639 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CPSF4O95639 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CPSF4O95639 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24■■□□□ 1.43
CPSF4O95639 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CPSF4O95639 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CPSF4O95639 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
CPSF4O95639 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24■■□□□ 1.43
CPSF4O95639 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24■■□□□ 1.43
CPSF4O95639 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CPSF4O95639 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24■■□□□ 1.43
CPSF4O95639 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CPSF4O95639 WHAMMP2-203ENST00000563942 1603 ntBASIC23.99■■□□□ 1.43
CPSF4O95639 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CPSF4O95639 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CPSF4O95639 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.99■■□□□ 1.43
CPSF4O95639 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CPSF4O95639 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CPSF4O95639 MIR3665-201ENST00000578708 105 ntBASIC23.98■■□□□ 1.43
CPSF4O95639 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.97■■□□□ 1.43
CPSF4O95639 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CPSF4O95639 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.96■■□□□ 1.43
CPSF4O95639 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CPSF4O95639 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CPSF4O95639 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CPSF4O95639 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CPSF4O95639 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CPSF4O95639 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CPSF4O95639 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.93■■□□□ 1.42
CPSF4O95639 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CPSF4O95639 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.93■■□□□ 1.42
CPSF4O95639 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
CPSF4O95639 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.93■■□□□ 1.42
CPSF4O95639 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CPSF4O95639 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CPSF4O95639 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CPSF4O95639 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.92■■□□□ 1.42
CPSF4O95639 LINC00273-201ENST00000539813 1452 ntBASIC23.92■■□□□ 1.42
CPSF4O95639 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CPSF4O95639 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CPSF4O95639 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
CPSF4O95639 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.89■■□□□ 1.42
CPSF4O95639 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
CPSF4O95639 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
CPSF4O95639 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
CPSF4O95639 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
CPSF4O95639 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CPSF4O95639 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CPSF4O95639 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.88■■□□□ 1.41
CPSF4O95639 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.88■■□□□ 1.41
CPSF4O95639 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CPSF4O95639 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
CPSF4O95639 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CPSF4O95639 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.87■■□□□ 1.41
CPSF4O95639 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.87■■□□□ 1.41
CPSF4O95639 AP006261.1-201ENST00000584783 668 ntBASIC23.87■■□□□ 1.41
CPSF4O95639 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CPSF4O95639 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
CPSF4O95639 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CPSF4O95639 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
CPSF4O95639 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CPSF4O95639 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.86■■□□□ 1.41
CPSF4O95639 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.86■■□□□ 1.41
CPSF4O95639 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.86■■□□□ 1.41
CPSF4O95639 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.86■■□□□ 1.41
CPSF4O95639 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CPSF4O95639 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
CPSF4O95639 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.85■■□□□ 1.41
CPSF4O95639 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.84■■□□□ 1.41
CPSF4O95639 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.84■■□□□ 1.41
CPSF4O95639 AC018358.1-201ENST00000631079 1402 ntBASIC23.84■■□□□ 1.41
CPSF4O95639 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CPSF4O95639 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CPSF4O95639 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms