Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC108673.1-201ENST00000510422 1159 ntBASIC24.45■■□□□ 1.5
LSM1O15116 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LSM1O15116 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.45■■□□□ 1.5
LSM1O15116 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
LSM1O15116 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
LSM1O15116 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
LSM1O15116 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LSM1O15116 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LSM1O15116 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.43■■□□□ 1.5
LSM1O15116 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LSM1O15116 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
LSM1O15116 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LSM1O15116 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LSM1O15116 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LSM1O15116 MIR6090-201ENST00000622481 60 ntBASIC24.42■■□□□ 1.5
LSM1O15116 DUX4L28-201ENST00000623687 678 ntBASIC24.42■■□□□ 1.5
LSM1O15116 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LSM1O15116 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
LSM1O15116 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
LSM1O15116 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LSM1O15116 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LSM1O15116 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.4■■□□□ 1.5
LSM1O15116 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LSM1O15116 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
LSM1O15116 WHAMMP2-203ENST00000563942 1603 ntBASIC24.4■■□□□ 1.5
LSM1O15116 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
LSM1O15116 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.39■■□□□ 1.49
LSM1O15116 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
LSM1O15116 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.38■■□□□ 1.49
LSM1O15116 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LSM1O15116 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
LSM1O15116 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
LSM1O15116 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LSM1O15116 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.37■■□□□ 1.49
LSM1O15116 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.37■■□□□ 1.49
LSM1O15116 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LSM1O15116 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
LSM1O15116 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.36■■□□□ 1.49
LSM1O15116 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC24.36■■□□□ 1.49
LSM1O15116 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
LSM1O15116 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
LSM1O15116 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
LSM1O15116 LINC00273-201ENST00000539813 1452 ntBASIC24.35■■□□□ 1.49
LSM1O15116 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
LSM1O15116 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
LSM1O15116 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
LSM1O15116 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
LSM1O15116 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LSM1O15116 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
LSM1O15116 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
LSM1O15116 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
LSM1O15116 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.33■■□□□ 1.49
LSM1O15116 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
LSM1O15116 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
LSM1O15116 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.32■■□□□ 1.48
LSM1O15116 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
LSM1O15116 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LSM1O15116 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.31■■□□□ 1.48
LSM1O15116 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LSM1O15116 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.31■■□□□ 1.48
LSM1O15116 MIR3665-201ENST00000578708 105 ntBASIC24.31■■□□□ 1.48
LSM1O15116 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
LSM1O15116 AC018358.1-201ENST00000631079 1402 ntBASIC24.31■■□□□ 1.48
LSM1O15116 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.3■■□□□ 1.48
LSM1O15116 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.3■■□□□ 1.48
LSM1O15116 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC24.3■■□□□ 1.48
LSM1O15116 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
LSM1O15116 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.3■■□□□ 1.48
LSM1O15116 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
LSM1O15116 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
LSM1O15116 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.28■■□□□ 1.48
LSM1O15116 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
LSM1O15116 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.28■■□□□ 1.48
LSM1O15116 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
LSM1O15116 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
LSM1O15116 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.28■■□□□ 1.48
LSM1O15116 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
LSM1O15116 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.26■■□□□ 1.47
LSM1O15116 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
LSM1O15116 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
LSM1O15116 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LSM1O15116 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LSM1O15116 AP006261.1-201ENST00000584783 668 ntBASIC24.25■■□□□ 1.47
LSM1O15116 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LSM1O15116 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LSM1O15116 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
LSM1O15116 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LSM1O15116 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LSM1O15116 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
LSM1O15116 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
LSM1O15116 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
LSM1O15116 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LSM1O15116 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
LSM1O15116 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
LSM1O15116 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
LSM1O15116 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
LSM1O15116 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
LSM1O15116 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
LSM1O15116 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LSM1O15116 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms