Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 AL161772.1-201ENST00000610494 4412 ntBASIC13.39□□□□□ -0.27
VPS25Q9BRG1 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC13.39□□□□□ -0.27
VPS25Q9BRG1 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.38□□□□□ -0.27
VPS25Q9BRG1 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 AC067930.6-201ENST00000623257 4947 ntBASIC13.38□□□□□ -0.27
VPS25Q9BRG1 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS25Q9BRG1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 AC090877.2-201ENST00000558441 1738 ntBASIC13.37□□□□□ -0.27
VPS25Q9BRG1 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS25Q9BRG1 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms