Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COPB1P53618 AC090164.3-201ENST00000610780 2143 ntBASIC20.98■□□□□ 0.95
COPB1P53618 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.97■□□□□ 0.95
COPB1P53618 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.97■□□□□ 0.95
COPB1P53618 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.97■□□□□ 0.95
COPB1P53618 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
COPB1P53618 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COPB1P53618 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COPB1P53618 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COPB1P53618 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 AC005082.1-201ENST00000413042 2259 ntBASIC20.96■□□□□ 0.95
COPB1P53618 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.96■□□□□ 0.95
COPB1P53618 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COPB1P53618 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.96■□□□□ 0.95
COPB1P53618 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
COPB1P53618 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COPB1P53618 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
COPB1P53618 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
COPB1P53618 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
COPB1P53618 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.95■□□□□ 0.94
COPB1P53618 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.95■□□□□ 0.94
COPB1P53618 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COPB1P53618 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.95■□□□□ 0.94
COPB1P53618 AC090192.1-201ENST00000517740 490 ntBASIC20.95■□□□□ 0.94
COPB1P53618 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.95■□□□□ 0.94
COPB1P53618 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.95■□□□□ 0.94
COPB1P53618 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.95■□□□□ 0.94
COPB1P53618 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.95■□□□□ 0.94
COPB1P53618 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.95■□□□□ 0.94
COPB1P53618 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.95■□□□□ 0.94
COPB1P53618 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.95■□□□□ 0.94
COPB1P53618 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COPB1P53618 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
COPB1P53618 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.94■□□□□ 0.94
COPB1P53618 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.94■□□□□ 0.94
COPB1P53618 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.94■□□□□ 0.94
COPB1P53618 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
COPB1P53618 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COPB1P53618 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.94■□□□□ 0.94
COPB1P53618 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.93■□□□□ 0.94
COPB1P53618 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COPB1P53618 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms