Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.48■□□□□ 0.55
LSM1O15116 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.48■□□□□ 0.55
LSM1O15116 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
LSM1O15116 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.48■□□□□ 0.55
LSM1O15116 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.48■□□□□ 0.55
LSM1O15116 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.48■□□□□ 0.55
LSM1O15116 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.48■□□□□ 0.55
LSM1O15116 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
LSM1O15116 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
LSM1O15116 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LSM1O15116 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LSM1O15116 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.47■□□□□ 0.55
LSM1O15116 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.47■□□□□ 0.55
LSM1O15116 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.47■□□□□ 0.55
LSM1O15116 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.47■□□□□ 0.55
LSM1O15116 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.47■□□□□ 0.55
LSM1O15116 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
LSM1O15116 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.47■□□□□ 0.55
LSM1O15116 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LSM1O15116 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LSM1O15116 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LSM1O15116 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
LSM1O15116 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LSM1O15116 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.46■□□□□ 0.55
LSM1O15116 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
LSM1O15116 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 AL031598.1-201ENST00000561511 1773 ntBASIC18.46■□□□□ 0.55
LSM1O15116 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.46■□□□□ 0.55
LSM1O15116 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.46■□□□□ 0.55
LSM1O15116 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.46■□□□□ 0.55
LSM1O15116 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.46■□□□□ 0.55
LSM1O15116 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.46■□□□□ 0.55
LSM1O15116 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.46■□□□□ 0.55
LSM1O15116 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
LSM1O15116 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LSM1O15116 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LSM1O15116 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.46■□□□□ 0.55
LSM1O15116 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.46■□□□□ 0.55
LSM1O15116 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
LSM1O15116 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.46■□□□□ 0.55
LSM1O15116 AC093525.10-201ENST00000625130 1569 ntBASIC18.46■□□□□ 0.55
LSM1O15116 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.46■□□□□ 0.55
LSM1O15116 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LSM1O15116 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.46■□□□□ 0.54
LSM1O15116 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.45■□□□□ 0.54
LSM1O15116 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 AC069152.1-201ENST00000438030 544 ntBASIC18.45■□□□□ 0.54
LSM1O15116 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.45■□□□□ 0.54
LSM1O15116 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
LSM1O15116 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
LSM1O15116 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.45■□□□□ 0.54
LSM1O15116 AL109923.1-201ENST00000618799 583 ntBASIC18.45■□□□□ 0.54
LSM1O15116 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
LSM1O15116 AC133041.1-202ENST00000642053 222 ntBASIC18.45■□□□□ 0.54
LSM1O15116 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.45■□□□□ 0.54
LSM1O15116 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.45■□□□□ 0.54
LSM1O15116 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LSM1O15116 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.45■□□□□ 0.54
LSM1O15116 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms