Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LSM1O15116 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.51■□□□□ 0.55
LSM1O15116 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.51■□□□□ 0.55
LSM1O15116 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 NEFHP1-201ENST00000412845 2629 ntBASIC18.51■□□□□ 0.55
LSM1O15116 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.51■□□□□ 0.55
LSM1O15116 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.51■□□□□ 0.55
LSM1O15116 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.51■□□□□ 0.55
LSM1O15116 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.51■□□□□ 0.55
LSM1O15116 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.51■□□□□ 0.55
LSM1O15116 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
LSM1O15116 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LSM1O15116 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
LSM1O15116 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LSM1O15116 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.51■□□□□ 0.55
LSM1O15116 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LSM1O15116 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.5■□□□□ 0.55
LSM1O15116 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.5■□□□□ 0.55
LSM1O15116 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
LSM1O15116 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 SOX15-203ENST00000570788 1093 ntBASIC18.5■□□□□ 0.55
LSM1O15116 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
LSM1O15116 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 IRX1P1-201ENST00000438849 1838 ntBASIC18.5■□□□□ 0.55
LSM1O15116 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LSM1O15116 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LSM1O15116 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LSM1O15116 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.5■□□□□ 0.55
LSM1O15116 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
LSM1O15116 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LSM1O15116 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
LSM1O15116 TUBB8P6-201ENST00000436895 1288 ntBASIC18.49■□□□□ 0.55
LSM1O15116 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.49■□□□□ 0.55
LSM1O15116 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.49■□□□□ 0.55
LSM1O15116 AC008687.6-201ENST00000596318 630 ntBASIC18.49■□□□□ 0.55
LSM1O15116 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.49■□□□□ 0.55
LSM1O15116 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LSM1O15116 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LSM1O15116 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 AC005082.1-201ENST00000413042 2259 ntBASIC18.49■□□□□ 0.55
LSM1O15116 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.49■□□□□ 0.55
LSM1O15116 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.49■□□□□ 0.55
LSM1O15116 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
LSM1O15116 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LSM1O15116 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.48■□□□□ 0.55
LSM1O15116 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.48■□□□□ 0.55
LSM1O15116 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.48■□□□□ 0.55
LSM1O15116 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LSM1O15116 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms