Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COPB1P53618 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COPB1P53618 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.05■□□□□ 0.96
COPB1P53618 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.05■□□□□ 0.96
COPB1P53618 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.05■□□□□ 0.96
COPB1P53618 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
COPB1P53618 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.05■□□□□ 0.96
COPB1P53618 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.05■□□□□ 0.96
COPB1P53618 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.05■□□□□ 0.96
COPB1P53618 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.05■□□□□ 0.96
COPB1P53618 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
COPB1P53618 AC098934.4-201ENST00000564127 592 ntBASIC21.05■□□□□ 0.96
COPB1P53618 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.05■□□□□ 0.96
COPB1P53618 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COPB1P53618 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.05■□□□□ 0.96
COPB1P53618 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.05■□□□□ 0.96
COPB1P53618 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.04■□□□□ 0.96
COPB1P53618 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.04■□□□□ 0.96
COPB1P53618 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.04■□□□□ 0.96
COPB1P53618 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.04■□□□□ 0.96
COPB1P53618 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
COPB1P53618 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.04■□□□□ 0.96
COPB1P53618 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 TUBB8P6-201ENST00000436895 1288 ntBASIC21.04■□□□□ 0.96
COPB1P53618 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.04■□□□□ 0.96
COPB1P53618 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.04■□□□□ 0.96
COPB1P53618 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.04■□□□□ 0.96
COPB1P53618 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.04■□□□□ 0.96
COPB1P53618 AC083880.1-201ENST00000608266 535 ntBASIC21.04■□□□□ 0.96
COPB1P53618 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.04■□□□□ 0.96
COPB1P53618 AL121829.2-201ENST00000620908 328 ntBASIC21.04■□□□□ 0.96
COPB1P53618 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.04■□□□□ 0.96
COPB1P53618 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
COPB1P53618 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.04■□□□□ 0.96
COPB1P53618 Z98044.1-201ENST00000632503 1764 ntBASIC21.04■□□□□ 0.96
COPB1P53618 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 WIZP1-201ENST00000531444 2299 ntBASIC21.04■□□□□ 0.96
COPB1P53618 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.04■□□□□ 0.96
COPB1P53618 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COPB1P53618 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
COPB1P53618 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 AL512353.2-201ENST00000448759 1962 ntBASIC21.03■□□□□ 0.96
COPB1P53618 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
COPB1P53618 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.03■□□□□ 0.96
COPB1P53618 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
COPB1P53618 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.03■□□□□ 0.96
COPB1P53618 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.03■□□□□ 0.96
COPB1P53618 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
COPB1P53618 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
COPB1P53618 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COPB1P53618 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.02■□□□□ 0.96
COPB1P53618 FEM1AP3-201ENST00000403722 1741 ntBASIC21.02■□□□□ 0.96
COPB1P53618 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.02■□□□□ 0.96
COPB1P53618 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.02■□□□□ 0.96
COPB1P53618 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.02■□□□□ 0.96
COPB1P53618 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
COPB1P53618 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.02■□□□□ 0.96
COPB1P53618 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
COPB1P53618 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COPB1P53618 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COPB1P53618 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms