Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LSM1O15116 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
LSM1O15116 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.66■□□□□ 0.58
LSM1O15116 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.65■□□□□ 0.58
LSM1O15116 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
LSM1O15116 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.65■□□□□ 0.58
LSM1O15116 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.65■□□□□ 0.58
LSM1O15116 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LSM1O15116 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.65■□□□□ 0.58
LSM1O15116 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LSM1O15116 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LSM1O15116 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LSM1O15116 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
LSM1O15116 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
LSM1O15116 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.64■□□□□ 0.57
LSM1O15116 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LSM1O15116 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.64■□□□□ 0.57
LSM1O15116 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.64■□□□□ 0.57
LSM1O15116 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.64■□□□□ 0.57
LSM1O15116 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.57
LSM1O15116 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 CROCCP3-202ENST00000420820 1947 ntBASIC18.64■□□□□ 0.57
LSM1O15116 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.64■□□□□ 0.57
LSM1O15116 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LSM1O15116 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LSM1O15116 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.64■□□□□ 0.57
LSM1O15116 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LSM1O15116 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 TSPY6P-201ENST00000448518 926 ntBASIC18.63■□□□□ 0.57
LSM1O15116 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.63■□□□□ 0.57
LSM1O15116 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.63■□□□□ 0.57
LSM1O15116 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.63■□□□□ 0.57
LSM1O15116 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.63■□□□□ 0.57
LSM1O15116 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.63■□□□□ 0.57
LSM1O15116 MYC-209ENST00000641252 345 ntBASIC18.63■□□□□ 0.57
LSM1O15116 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
LSM1O15116 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.63■□□□□ 0.57
LSM1O15116 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LSM1O15116 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.63■□□□□ 0.57
LSM1O15116 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
LSM1O15116 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.63■□□□□ 0.57
LSM1O15116 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LSM1O15116 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
LSM1O15116 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LSM1O15116 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LSM1O15116 SLC29A4P1-201ENST00000398760 971 ntBASIC18.62■□□□□ 0.57
LSM1O15116 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.62■□□□□ 0.57
LSM1O15116 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.62■□□□□ 0.57
LSM1O15116 NCF1B-203ENST00000435988 1254 ntBASIC18.62■□□□□ 0.57
LSM1O15116 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms