Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM1O15116 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM1O15116 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 CROCCP5-201ENST00000436658 830 ntBASIC18.77■□□□□ 0.6
LSM1O15116 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.77■□□□□ 0.6
LSM1O15116 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.77■□□□□ 0.6
LSM1O15116 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.77■□□□□ 0.6
LSM1O15116 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.77■□□□□ 0.6
LSM1O15116 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM1O15116 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM1O15116 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LSM1O15116 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM1O15116 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LSM1O15116 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.77■□□□□ 0.59
LSM1O15116 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.77■□□□□ 0.59
LSM1O15116 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
LSM1O15116 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LSM1O15116 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.76■□□□□ 0.59
LSM1O15116 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LSM1O15116 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.76■□□□□ 0.59
LSM1O15116 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM1O15116 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM1O15116 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LSM1O15116 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 MIPEPP3-201ENST00000412105 444 ntBASIC18.75■□□□□ 0.59
LSM1O15116 AL390719.1-204ENST00000412397 1219 ntBASIC18.75■□□□□ 0.59
LSM1O15116 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.75■□□□□ 0.59
LSM1O15116 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.75■□□□□ 0.59
LSM1O15116 AL137784.2-201ENST00000607332 1000 ntBASIC18.75■□□□□ 0.59
LSM1O15116 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LSM1O15116 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM1O15116 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM1O15116 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
LSM1O15116 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.74■□□□□ 0.59
LSM1O15116 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.74■□□□□ 0.59
LSM1O15116 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.74■□□□□ 0.59
LSM1O15116 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.74■□□□□ 0.59
LSM1O15116 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM1O15116 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
LSM1O15116 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM1O15116 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms