Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
DEPDC4Q8N2C3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 AC010864.1-201ENST00000609407 1511 ntBASIC23.59■■□□□ 1.37
DEPDC4Q8N2C3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 RPS2P35-201ENST00000443417 897 ntBASIC23.58■■□□□ 1.37
DEPDC4Q8N2C3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.57■■□□□ 1.36
DEPDC4Q8N2C3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
DEPDC4Q8N2C3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
DEPDC4Q8N2C3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC23.56■■□□□ 1.36
DEPDC4Q8N2C3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
DEPDC4Q8N2C3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
DEPDC4Q8N2C3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
DEPDC4Q8N2C3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 MIR3665-201ENST00000578708 105 ntBASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
DEPDC4Q8N2C3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DEPDC4Q8N2C3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.52■■□□□ 1.36
DEPDC4Q8N2C3 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.52■■□□□ 1.36
DEPDC4Q8N2C3 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
DEPDC4Q8N2C3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.51■■□□□ 1.35
DEPDC4Q8N2C3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DEPDC4Q8N2C3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.5■■□□□ 1.35
DEPDC4Q8N2C3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 AL162393.1-201ENST00000437852 946 ntBASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 AP004833.2-201ENST00000532228 1454 ntBASIC23.49■■□□□ 1.35
DEPDC4Q8N2C3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
DEPDC4Q8N2C3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
DEPDC4Q8N2C3 MIR762-201ENST00000390236 83 ntBASIC23.47■■□□□ 1.35
DEPDC4Q8N2C3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
DEPDC4Q8N2C3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
DEPDC4Q8N2C3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.45■■□□□ 1.35
DEPDC4Q8N2C3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 AC005559.1-201ENST00000589661 871 ntBASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
DEPDC4Q8N2C3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
DEPDC4Q8N2C3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
DEPDC4Q8N2C3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
DEPDC4Q8N2C3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
DEPDC4Q8N2C3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
DEPDC4Q8N2C3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.41■■□□□ 1.34
DEPDC4Q8N2C3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
DEPDC4Q8N2C3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
DEPDC4Q8N2C3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC23.39■■□□□ 1.33
DEPDC4Q8N2C3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 LINC01003-201ENST00000564834 1764 ntBASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
DEPDC4Q8N2C3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
DEPDC4Q8N2C3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms