Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
LSM1O15116 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.05■□□□□ 0.64
LSM1O15116 AC010980.2-201ENST00000587099 1412 ntBASIC19.05■□□□□ 0.64
LSM1O15116 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
LSM1O15116 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LSM1O15116 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LSM1O15116 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 HLA-G-202ENST00000376815 851 ntBASIC19.04■□□□□ 0.64
LSM1O15116 HLA-G-203ENST00000376818 1127 ntBASIC19.04■□□□□ 0.64
LSM1O15116 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 AC007322.1-201ENST00000426983 750 ntBASIC19.04■□□□□ 0.64
LSM1O15116 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.04■□□□□ 0.64
LSM1O15116 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.04■□□□□ 0.64
LSM1O15116 OR10C1-204ENST00000622521 1039 ntBASIC19.04■□□□□ 0.64
LSM1O15116 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.04■□□□□ 0.64
LSM1O15116 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LSM1O15116 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
LSM1O15116 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
LSM1O15116 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
LSM1O15116 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.03■□□□□ 0.64
LSM1O15116 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 C2orf69P4-201ENST00000565394 541 ntBASIC19.03■□□□□ 0.64
LSM1O15116 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.03■□□□□ 0.64
LSM1O15116 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.03■□□□□ 0.64
LSM1O15116 AL589743.5-201ENST00000616611 1050 ntBASIC19.03■□□□□ 0.64
LSM1O15116 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LSM1O15116 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
LSM1O15116 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.03■□□□□ 0.64
LSM1O15116 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LSM1O15116 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.03■□□□□ 0.64
LSM1O15116 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.02■□□□□ 0.64
LSM1O15116 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
LSM1O15116 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.02■□□□□ 0.64
LSM1O15116 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.02■□□□□ 0.64
LSM1O15116 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 AC023632.3-201ENST00000521633 145 ntBASIC19.02■□□□□ 0.64
LSM1O15116 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.02■□□□□ 0.64
LSM1O15116 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
LSM1O15116 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LSM1O15116 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.02■□□□□ 0.63
LSM1O15116 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LSM1O15116 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LSM1O15116 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
LSM1O15116 AP000974.1-201ENST00000623909 2387 ntBASIC19.01■□□□□ 0.63
LSM1O15116 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
LSM1O15116 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.01■□□□□ 0.63
LSM1O15116 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LSM1O15116 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.01■□□□□ 0.63
LSM1O15116 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 KRT17P1-201ENST00000399211 1546 ntBASIC19.01■□□□□ 0.63
LSM1O15116 PHGDH-210ENST00000641115 1638 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 951.3 ms