Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.17■□□□□ 0.66
LSM1O15116 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LSM1O15116 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.17■□□□□ 0.66
LSM1O15116 AC105020.6-201ENST00000621523 1217 ntBASIC19.17■□□□□ 0.66
LSM1O15116 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.17■□□□□ 0.66
LSM1O15116 AC009237.14-201ENST00000609975 1594 ntBASIC19.17■□□□□ 0.66
LSM1O15116 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.17■□□□□ 0.66
LSM1O15116 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
LSM1O15116 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LSM1O15116 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
LSM1O15116 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LSM1O15116 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
LSM1O15116 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.16■□□□□ 0.66
LSM1O15116 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LSM1O15116 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.16■□□□□ 0.66
LSM1O15116 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LSM1O15116 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM1O15116 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
LSM1O15116 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LSM1O15116 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.16■□□□□ 0.66
LSM1O15116 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.16■□□□□ 0.66
LSM1O15116 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.16■□□□□ 0.66
LSM1O15116 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LSM1O15116 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LSM1O15116 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LSM1O15116 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.15■□□□□ 0.66
LSM1O15116 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.15■□□□□ 0.66
LSM1O15116 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LSM1O15116 AC016769.1-201ENST00000409132 1010 ntBASIC19.15■□□□□ 0.66
LSM1O15116 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.15■□□□□ 0.66
LSM1O15116 AC006015.1-201ENST00000429970 570 ntBASIC19.15■□□□□ 0.66
LSM1O15116 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.15■□□□□ 0.66
LSM1O15116 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.15■□□□□ 0.66
LSM1O15116 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.15■□□□□ 0.66
LSM1O15116 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 AL031963.3-201ENST00000606441 850 ntBASIC19.15■□□□□ 0.66
LSM1O15116 AC011767.1-201ENST00000617410 1153 ntBASIC19.15■□□□□ 0.66
LSM1O15116 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LSM1O15116 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
LSM1O15116 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LSM1O15116 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LSM1O15116 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LSM1O15116 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
LSM1O15116 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
LSM1O15116 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 KRT18P68-201ENST00000392293 1000 ntBASIC19.14■□□□□ 0.65
LSM1O15116 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.14■□□□□ 0.65
LSM1O15116 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
LSM1O15116 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.14■□□□□ 0.65
LSM1O15116 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.14■□□□□ 0.65
LSM1O15116 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LSM1O15116 AC093484.2-201ENST00000580996 2166 ntBASIC19.14■□□□□ 0.65
LSM1O15116 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.14■□□□□ 0.65
LSM1O15116 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LSM1O15116 AC087289.5-201ENST00000586076 3175 ntBASIC19.14■□□□□ 0.65
LSM1O15116 AC005332.7-201ENST00000614046 2005 ntBASIC19.13■□□□□ 0.65
LSM1O15116 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.13■□□□□ 0.65
LSM1O15116 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.13■□□□□ 0.65
LSM1O15116 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.13■□□□□ 0.65
LSM1O15116 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.13■□□□□ 0.65
LSM1O15116 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.13■□□□□ 0.65
LSM1O15116 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LSM1O15116 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms