RNA–Protein interactions for RNA: ENST00000551165.5

SSH1-209, Transcript of slingshot protein phosphatase 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SSH1, Length 2,354 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-209ENST00000551165 NISCHQ9Y2I1 1504 aa44.28■■■■■ 4.68
SSH1-209ENST00000551165 CCDC180Q9P1Z9 1646 aa38.36■■■■□ 3.73
SSH1-209ENST00000551165 ZCCHC6Q5VYS8 1495 aaKnown RBP37.21■■■■□ 3.55
SSH1-209ENST00000551165 DCAF8L2P0C7V8 631 aa36.79■■■■□ 3.48
SSH1-209ENST00000551165 SHROOM4Q9ULL8 1493 aa36.54■■■■□ 3.44
SSH1-209ENST00000551165 ABCC9O60706 1549 aa36.45■■■■□ 3.43
SSH1-209ENST00000551165 DCAF1Q9Y4B6 1507 aa36.45■■■■□ 3.42
SSH1-209ENST00000551165 MYO15BQ96JP2 1530 aa35.91■■■■□ 3.34
SSH1-209ENST00000551165 NACADO15069 1562 aa35.74■■■■□ 3.31
SSH1-209ENST00000551165 SCRIBQ14160 1630 aa35.56■■■■□ 3.28
SSH1-209ENST00000551165 RB1CC1Q8TDY2 1594 aa35.42■■■■□ 3.26
SSH1-209ENST00000551165 SUPT5HO00267 1087 aaKnown RBP35.2■■■■□ 3.22
SSH1-209ENST00000551165 UNC13AQ9UPW8 1703 aa34.85■■■■□ 3.17
SSH1-209ENST00000551165 CECR2Q9BXF3 1484 aa34.56■■■■□ 3.12
SSH1-209ENST00000551165 PABPN1Q86U42 306 aaKnown RBP eCLIP34.51■■■■□ 3.12
SSH1-209ENST00000551165 BICRAQ9NZM4 1560 aa34.49■■■■□ 3.11
SSH1-209ENST00000551165 RSF1Q96T23 1441 aaPredicted RBP34.49■■■■□ 3.11
SSH1-209ENST00000551165 MROH2BQ7Z745 1585 aa34.32■■■■□ 3.09
SSH1-209ENST00000551165 BAZ1AQ9NRL2 1556 aaPredicted RBP34.12■■■■□ 3.05
SSH1-209ENST00000551165 WIZO95785 1651 aa34.06■■■■□ 3.04
SSH1-209ENST00000551165 SMARCA4P51532 1647 aa34■■■■□ 3.03
SSH1-209ENST00000551165 CHIC1Q5VXU3 224 aa33.69■■■□□ 2.98
SSH1-209ENST00000551165 TOP2AP11388 1531 aaKnown RBP33.56■■■□□ 2.96
SSH1-209ENST00000551165 PEG3Q9GZU2 1588 aa33.48■■■□□ 2.95
SSH1-209ENST00000551165 ATAD2BQ9ULI0 1458 aa33.43■■■□□ 2.94
SSH1-209ENST00000551165 EIF4G1Q04637 1599 aaKnown RBP33.4■■■□□ 2.94
SSH1-209ENST00000551165 CCDC88BA6NC98 1476 aa33.34■■■□□ 2.93
SSH1-209ENST00000551165 SMARCA2P51531 1590 aa33.32■■■□□ 2.93
SSH1-209ENST00000551165 BAZ1BQ9UIG0 1483 aaKnown RBP33.23■■■□□ 2.91
SSH1-209ENST00000551165 NCAPD3P42695 1498 aa33.05■■■□□ 2.88
SSH1-209ENST00000551165 HMGXB3Q12766 1538 aa32.96■■■□□ 2.87
SSH1-209ENST00000551165 TRIM41Q8WV44 630 aa32.95■■■□□ 2.87
SSH1-209ENST00000551165 CC2D2AQ9P2K1 1620 aa32.9■■■□□ 2.86
SSH1-209ENST00000551165 ABCC8Q09428 1581 aa32.77■■■□□ 2.84
SSH1-209ENST00000551165 LOC105371045A0A1W2PR82 267 aa32.56■■■□□ 2.8
SSH1-209ENST00000551165 FAM9AQ8IZU1 332 aaPredicted RBP32.54■■■□□ 2.8
SSH1-209ENST00000551165 WRNQ14191 1432 aaPredicted RBP eCLIP32.41■■■□□ 2.789e-6■■■■■ 50.1
SSH1-209ENST00000551165 CFTRP13569 1480 aa32.39■■■□□ 2.78
SSH1-209ENST00000551165 DNAJC5BQ9UF47 199 aa32.34■■■□□ 2.77
SSH1-209ENST00000551165 SYNJ1O43426 1573 aa32.33■■■□□ 2.77
SSH1-209ENST00000551165 CADPSQ9ULU8 1353 aa32.26■■■□□ 2.76
SSH1-209ENST00000551165 EHMT2Q96KQ7 1210 aa32.21■■■□□ 2.75
SSH1-209ENST00000551165 SOGA1O94964 1423 aa32.2■■■□□ 2.75
SSH1-209ENST00000551165 PRDM2Q13029 1718 aa32.12■■■□□ 2.73
SSH1-209ENST00000551165 RUSC2Q8N2Y8 1516 aa32.12■■■□□ 2.73
SSH1-209ENST00000551165 NESP48681 1621 aa32.09■■■□□ 2.73
SSH1-209ENST00000551165 TOP2BQ02880 1626 aa32.08■■■□□ 2.73
SSH1-209ENST00000551165 CUX1P39880 1505 aa32.05■■■□□ 2.72
SSH1-209ENST00000551165 BIVM-ERCC5R4GMW8 1640 aa32.02■■■□□ 2.72
SSH1-209ENST00000551165 FANCD2Q9BXW9 1451 aa31.93■■■□□ 2.7
SSH1-209ENST00000551165 CSRNP3Q8WYN3 585 aa31.88■■■□□ 2.69
SSH1-209ENST00000551165 EEA1Q15075 1411 aa31.87■■■□□ 2.69
SSH1-209ENST00000551165 LAMC3Q9Y6N6 1575 aa31.85■■■□□ 2.69
SSH1-209ENST00000551165 CEP164Q9UPV0 1460 aa31.67■■■□□ 2.66
SSH1-209ENST00000551165 FGD5Q6ZNL6 1462 aa31.66■■■□□ 2.66
SSH1-209ENST00000551165 PDS5BQ9NTI5 1447 aa31.63■■■□□ 2.65
SSH1-209ENST00000551165 DNMBPQ6XZF7 1577 aa31.6■■■□□ 2.65
SSH1-209ENST00000551165 TOPBP1Q92547 1522 aa31.6■■■□□ 2.65
SSH1-209ENST00000551165 KIF21AQ7Z4S6 1674 aa31.59■■■□□ 2.65
SSH1-209ENST00000551165 URB2Q14146 1524 aaKnown RBP31.57■■■□□ 2.64
SSH1-209ENST00000551165 GOLGA3Q08378 1498 aa31.56■■■□□ 2.64
SSH1-209ENST00000551165 UBTFP17480 764 aaKnown RBP31.55■■■□□ 2.64
SSH1-209ENST00000551165 KIF27Q86VH2 1401 aa31.53■■■□□ 2.64
SSH1-209ENST00000551165 KIF21BO75037 1637 aa31.53■■■□□ 2.64
SSH1-209ENST00000551165 TNIKQ9UKE5 1360 aa31.5■■■□□ 2.63
SSH1-209ENST00000551165 CUX2O14529 1486 aa31.5■■■□□ 2.63
SSH1-209ENST00000551165 RAPGEF2Q9Y4G8 1499 aa31.49■■■□□ 2.63
SSH1-209ENST00000551165 POLA1P09884 1462 aaPredicted RBP31.48■■■□□ 2.63
SSH1-209ENST00000551165 RAD54L2Q9Y4B4 1467 aa31.47■■■□□ 2.63
SSH1-209ENST00000551165 CEP162Q5TB80 1403 aa31.41■■■□□ 2.62
SSH1-209ENST00000551165 PRXQ9BXM0 1461 aa31.39■■■□□ 2.62
SSH1-209ENST00000551165 IGF1RP08069 1367 aa31.33■■■□□ 2.61
SSH1-209ENST00000551165 ABCA10Q8WWZ4 1543 aa31.31■■■□□ 2.6
SSH1-209ENST00000551165 ERICH3Q5RHP9 1530 aa31.26■■■□□ 2.59
SSH1-209ENST00000551165 MRC2Q9UBG0 1479 aa31.24■■■□□ 2.59
SSH1-209ENST00000551165 WDR97A6NE52 1622 aa31.19■■■□□ 2.58
SSH1-209ENST00000551165 RANGAP1P46060 587 aaPredicted RBP31.19■■■□□ 2.58
SSH1-209ENST00000551165 PCGF6Q9BYE7 350 aa31.18■■■□□ 2.58
SSH1-209ENST00000551165 TDRD9Q8NDG6 1382 aaKnown RBP31.16■■■□□ 2.58
SSH1-209ENST00000551165 CARMIL1Q5VZK9 1371 aa31.14■■■□□ 2.58
SSH1-209ENST00000551165 ERCC6Q03468 1493 aa31.13■■■□□ 2.57
SSH1-209ENST00000551165 CLIP1P30622 1438 aa31.12■■■□□ 2.57
SSH1-209ENST00000551165 PPARGC1BQ86YN6 1023 aaKnown RBP31.12■■■□□ 2.57
SSH1-209ENST00000551165 TARBP1Q13395 1621 aaKnown RBP31.11■■■□□ 2.57
SSH1-209ENST00000551165 WDR62O43379 1518 aa31.06■■■□□ 2.56
SSH1-209ENST00000551165 ABCA5Q8WWZ7 1642 aa31.05■■■□□ 2.56
SSH1-209ENST00000551165 GAPVD1Q14C86 1478 aa31.01■■■□□ 2.56
SSH1-209ENST00000551165 THOC2Q8NI27 1593 aaKnown RBP30.97■■■□□ 2.55
SSH1-209ENST00000551165 TRIM26Q12899 539 aaPredicted RBP30.97■■■□□ 2.55
SSH1-209ENST00000551165 AQRO60306 1485 aaKnown RBP eCLIP30.93■■■□□ 2.54
SSH1-209ENST00000551165 CUL7Q14999 1698 aa30.91■■■□□ 2.54
SSH1-209ENST00000551165 ZNF608Q9ULD9 1512 aaPredicted RBP30.88■■■□□ 2.53
SSH1-209ENST00000551165 IFT140Q96RY7 1462 aa30.86■■■□□ 2.53
SSH1-209ENST00000551165 VPS8Q8N3P4 1428 aa30.83■■■□□ 2.53
SSH1-209ENST00000551165 ARAP1Q96P48 1450 aa30.83■■■□□ 2.53
SSH1-209ENST00000551165 TTBK1Q5TCY1 1321 aaPredicted RBP30.82■■■□□ 2.53
SSH1-209ENST00000551165 PBRM1Q86U86 1689 aa30.79■■■□□ 2.52
SSH1-209ENST00000551165 ARHGAP35Q9NRY4 1499 aa30.79■■■□□ 2.52
SSH1-209ENST00000551165 GRIN2BQ13224 1484 aa30.7■■■□□ 2.5
SSH1-209ENST00000551165 EIF4G3O43432 1585 aaKnown RBP30.66■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms