Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.96■□□□□ 0.79
LDB2O43679 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LDB2O43679 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.95■□□□□ 0.78
LDB2O43679 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.95■□□□□ 0.78
LDB2O43679 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.95■□□□□ 0.78
LDB2O43679 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.95■□□□□ 0.78
LDB2O43679 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.95■□□□□ 0.78
LDB2O43679 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.95■□□□□ 0.78
LDB2O43679 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LDB2O43679 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.95■□□□□ 0.78
LDB2O43679 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 AC005829.2-201ENST00000571422 1056 ntBASIC19.95■□□□□ 0.78
LDB2O43679 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.95■□□□□ 0.78
LDB2O43679 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.95■□□□□ 0.78
LDB2O43679 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LDB2O43679 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.95■□□□□ 0.78
LDB2O43679 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LDB2O43679 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.94■□□□□ 0.78
LDB2O43679 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LDB2O43679 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.94■□□□□ 0.78
LDB2O43679 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.94■□□□□ 0.78
LDB2O43679 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LDB2O43679 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
LDB2O43679 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.94■□□□□ 0.78
LDB2O43679 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LDB2O43679 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LDB2O43679 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
LDB2O43679 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.94■□□□□ 0.78
LDB2O43679 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
LDB2O43679 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.94■□□□□ 0.78
LDB2O43679 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.93■□□□□ 0.78
LDB2O43679 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.93■□□□□ 0.78
LDB2O43679 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.93■□□□□ 0.78
LDB2O43679 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LDB2O43679 HLA-B-256ENST00000639848 1089 ntBASIC19.93■□□□□ 0.78
LDB2O43679 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.93■□□□□ 0.78
LDB2O43679 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.93■□□□□ 0.78
LDB2O43679 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LDB2O43679 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.93■□□□□ 0.78
LDB2O43679 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LDB2O43679 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.92■□□□□ 0.78
LDB2O43679 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LDB2O43679 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.92■□□□□ 0.78
LDB2O43679 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.92■□□□□ 0.78
LDB2O43679 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.92■□□□□ 0.78
LDB2O43679 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.92■□□□□ 0.78
LDB2O43679 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.92■□□□□ 0.78
LDB2O43679 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.92■□□□□ 0.78
LDB2O43679 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.92■□□□□ 0.78
LDB2O43679 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
LDB2O43679 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
LDB2O43679 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
LDB2O43679 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 AC009237.14-201ENST00000609975 1594 ntBASIC19.91■□□□□ 0.78
LDB2O43679 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LDB2O43679 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.91■□□□□ 0.78
LDB2O43679 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.91■□□□□ 0.78
LDB2O43679 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LDB2O43679 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.91■□□□□ 0.78
LDB2O43679 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms