Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.14■■■□□ 2.1
SMIM28A0A1B0GU29 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.14■■■□□ 2.1
SMIM28A0A1B0GU29 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.14■■■□□ 2.1
SMIM28A0A1B0GU29 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMIM28A0A1B0GU29 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.13■■■□□ 2.09
SMIM28A0A1B0GU29 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC28.13■■■□□ 2.09
SMIM28A0A1B0GU29 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SMIM28A0A1B0GU29 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SMIM28A0A1B0GU29 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.12■■■□□ 2.09
SMIM28A0A1B0GU29 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.11■■■□□ 2.09
SMIM28A0A1B0GU29 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SMIM28A0A1B0GU29 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SMIM28A0A1B0GU29 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC28.11■■■□□ 2.09
SMIM28A0A1B0GU29 AC016575.1-201ENST00000607026 382 ntBASIC28.1■■■□□ 2.09
SMIM28A0A1B0GU29 CR559946.2-201ENST00000623684 991 ntBASIC28.1■■■□□ 2.09
SMIM28A0A1B0GU29 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
SMIM28A0A1B0GU29 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SMIM28A0A1B0GU29 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.09■■■□□ 2.09
SMIM28A0A1B0GU29 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.08■■■□□ 2.09
SMIM28A0A1B0GU29 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
SMIM28A0A1B0GU29 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.08■■■□□ 2.09
SMIM28A0A1B0GU29 ST7-AS1-201ENST00000456775 1889 ntBASIC28.08■■■□□ 2.09
SMIM28A0A1B0GU29 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L13-201ENST00000554103 1267 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L15-201ENST00000611059 1267 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L23-201ENST00000615195 1269 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L24-201ENST00000617576 1269 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L22-201ENST00000618238 1269 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L20-201ENST00000619712 1269 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L21-201ENST00000622058 1269 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L10-201ENST00000622460 1267 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 DUX4L25-201ENST00000624915 1269 ntBASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.07■■■□□ 2.08
SMIM28A0A1B0GU29 MIR639-201ENST00000384974 98 ntBASIC28.06■■■□□ 2.08
SMIM28A0A1B0GU29 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.06■■■□□ 2.08
SMIM28A0A1B0GU29 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SMIM28A0A1B0GU29 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC28.06■■■□□ 2.08
SMIM28A0A1B0GU29 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC28.06■■■□□ 2.08
SMIM28A0A1B0GU29 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
SMIM28A0A1B0GU29 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
SMIM28A0A1B0GU29 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
SMIM28A0A1B0GU29 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SMIM28A0A1B0GU29 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.03■■■□□ 2.08
SMIM28A0A1B0GU29 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SMIM28A0A1B0GU29 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMIM28A0A1B0GU29 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMIM28A0A1B0GU29 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.03■■■□□ 2.08
SMIM28A0A1B0GU29 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SMIM28A0A1B0GU29 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SMIM28A0A1B0GU29 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SMIM28A0A1B0GU29 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SMIM28A0A1B0GU29 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.01■■■□□ 2.08
SMIM28A0A1B0GU29 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
SMIM28A0A1B0GU29 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.01■■■□□ 2.07
SMIM28A0A1B0GU29 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SMIM28A0A1B0GU29 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28■■■□□ 2.07
SMIM28A0A1B0GU29 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28■■■□□ 2.07
SMIM28A0A1B0GU29 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.99■■■□□ 2.07
SMIM28A0A1B0GU29 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
SMIM28A0A1B0GU29 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SMIM28A0A1B0GU29 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SMIM28A0A1B0GU29 AC135983.2-203ENST00000454486 1613 ntBASIC27.97■■■□□ 2.07
SMIM28A0A1B0GU29 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
SMIM28A0A1B0GU29 MIR4449-201ENST00000578365 66 ntBASIC27.96■■■□□ 2.07
SMIM28A0A1B0GU29 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.95■■■□□ 2.06
SMIM28A0A1B0GU29 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SMIM28A0A1B0GU29 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SMIM28A0A1B0GU29 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SMIM28A0A1B0GU29 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
SMIM28A0A1B0GU29 WHAMMP2-203ENST00000563942 1603 ntBASIC27.94■■■□□ 2.06
SMIM28A0A1B0GU29 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.94■■■□□ 2.06
SMIM28A0A1B0GU29 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
SMIM28A0A1B0GU29 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
SMIM28A0A1B0GU29 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMIM28A0A1B0GU29 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC27.92■■■□□ 2.06
SMIM28A0A1B0GU29 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMIM28A0A1B0GU29 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC27.92■■■□□ 2.06
SMIM28A0A1B0GU29 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SMIM28A0A1B0GU29 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
SMIM28A0A1B0GU29 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SMIM28A0A1B0GU29 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
SMIM28A0A1B0GU29 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27.88■■■□□ 2.05
SMIM28A0A1B0GU29 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
SMIM28A0A1B0GU29 ST7-202ENST00000323984 2142 ntTSL 5 BASIC27.88■■■□□ 2.05
SMIM28A0A1B0GU29 ST7-207ENST00000393449 2127 ntTSL 5 BASIC27.88■■■□□ 2.05
SMIM28A0A1B0GU29 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMIM28A0A1B0GU29 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.87■■■□□ 2.05
SMIM28A0A1B0GU29 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.87■■■□□ 2.05
SMIM28A0A1B0GU29 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.87■■■□□ 2.05
SMIM28A0A1B0GU29 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SMIM28A0A1B0GU29 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC27.86■■■□□ 2.05
SMIM28A0A1B0GU29 METRNL-202ENST00000570778 967 ntTSL 5 BASIC27.86■■■□□ 2.05
SMIM28A0A1B0GU29 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SMIM28A0A1B0GU29 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SMIM28A0A1B0GU29 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC27.84■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms