Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA4P78363 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA4P78363 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 AL117328.2-201ENST00000624617 1940 ntBASIC17.22■□□□□ 0.35
ABCA4P78363 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 AC005521.1-201ENST00000393351 872 ntBASIC17.22■□□□□ 0.35
ABCA4P78363 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.22■□□□□ 0.35
ABCA4P78363 AC023632.3-201ENST00000521633 145 ntBASIC17.22■□□□□ 0.35
ABCA4P78363 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA4P78363 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.22■□□□□ 0.35
ABCA4P78363 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA4P78363 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA4P78363 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
ABCA4P78363 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.22■□□□□ 0.35
ABCA4P78363 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA4P78363 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.22■□□□□ 0.35
ABCA4P78363 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 RBM17P1-201ENST00000453646 1190 ntBASIC17.22■□□□□ 0.35
ABCA4P78363 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA4P78363 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.22■□□□□ 0.35
ABCA4P78363 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.22■□□□□ 0.35
ABCA4P78363 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA4P78363 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA4P78363 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.21■□□□□ 0.35
ABCA4P78363 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ABCA4P78363 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA4P78363 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ABCA4P78363 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.21■□□□□ 0.35
ABCA4P78363 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.21■□□□□ 0.35
ABCA4P78363 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.21■□□□□ 0.35
ABCA4P78363 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.21■□□□□ 0.35
ABCA4P78363 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
ABCA4P78363 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.21■□□□□ 0.35
ABCA4P78363 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA4P78363 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA4P78363 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA4P78363 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC17.21■□□□□ 0.35
ABCA4P78363 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
ABCA4P78363 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.21■□□□□ 0.34
ABCA4P78363 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.21■□□□□ 0.34
ABCA4P78363 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.21■□□□□ 0.34
ABCA4P78363 MIR2861-201ENST00000636310 90 ntBASIC17.21■□□□□ 0.34
ABCA4P78363 AC027702.1-201ENST00000563810 1770 ntBASIC17.2■□□□□ 0.34
ABCA4P78363 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.2■□□□□ 0.34
ABCA4P78363 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 CYP2D8P-201ENST00000433633 1490 ntBASIC17.2■□□□□ 0.34
ABCA4P78363 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
ABCA4P78363 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
ABCA4P78363 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.19■□□□□ 0.34
ABCA4P78363 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.19■□□□□ 0.34
ABCA4P78363 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.19■□□□□ 0.34
ABCA4P78363 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
ABCA4P78363 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
ABCA4P78363 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
ABCA4P78363 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
ABCA4P78363 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.19■□□□□ 0.34
ABCA4P78363 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
ABCA4P78363 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
ABCA4P78363 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.19■□□□□ 0.34
ABCA4P78363 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
ABCA4P78363 AC244015.2-201ENST00000616358 1861 ntBASIC17.18■□□□□ 0.34
ABCA4P78363 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
ABCA4P78363 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.18■□□□□ 0.34
ABCA4P78363 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.18■□□□□ 0.34
ABCA4P78363 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
ABCA4P78363 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
ABCA4P78363 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.18■□□□□ 0.34
ABCA4P78363 KSR1P1-201ENST00000446298 240 ntBASIC17.18■□□□□ 0.34
ABCA4P78363 AP002982.1-201ENST00000492365 877 ntBASIC17.18■□□□□ 0.34
ABCA4P78363 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.18■□□□□ 0.34
ABCA4P78363 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms