Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 CHML-205ENST00000638160 705 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS25Q9BRG1 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
VPS25Q9BRG1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.08□□□□□ -0.15
VPS25Q9BRG1 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.08□□□□□ -0.15
VPS25Q9BRG1 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
VPS25Q9BRG1 CICP6-201ENST00000457191 2729 ntBASIC14.08□□□□□ -0.15
VPS25Q9BRG1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 AC005559.1-201ENST00000589661 871 ntBASIC14.08□□□□□ -0.16
VPS25Q9BRG1 CAHM-201ENST00000604200 896 ntBASIC14.08□□□□□ -0.16
VPS25Q9BRG1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS25Q9BRG1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS25Q9BRG1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
VPS25Q9BRG1 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms