Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 AL353807.1-201ENST00000427475 662 ntBASIC17.35■□□□□ 0.37
ABCA4P78363 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.35■□□□□ 0.37
ABCA4P78363 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.35■□□□□ 0.37
ABCA4P78363 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.35■□□□□ 0.37
ABCA4P78363 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 FBXW4P1-201ENST00000426721 2239 ntBASIC17.35■□□□□ 0.37
ABCA4P78363 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
ABCA4P78363 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
ABCA4P78363 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.35■□□□□ 0.37
ABCA4P78363 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.35■□□□□ 0.37
ABCA4P78363 AL121829.2-201ENST00000620908 328 ntBASIC17.35■□□□□ 0.37
ABCA4P78363 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
ABCA4P78363 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
ABCA4P78363 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.34■□□□□ 0.37
ABCA4P78363 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.34■□□□□ 0.37
ABCA4P78363 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.34■□□□□ 0.37
ABCA4P78363 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.34■□□□□ 0.37
ABCA4P78363 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.34■□□□□ 0.37
ABCA4P78363 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.34■□□□□ 0.37
ABCA4P78363 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
ABCA4P78363 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
ABCA4P78363 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC17.34■□□□□ 0.37
ABCA4P78363 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ABCA4P78363 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA4P78363 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
ABCA4P78363 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
ABCA4P78363 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA4P78363 AF186192.3-201ENST00000583427 947 ntBASIC17.33■□□□□ 0.37
ABCA4P78363 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.33■□□□□ 0.37
ABCA4P78363 AL590326.2-201ENST00000625139 305 ntBASIC17.33■□□□□ 0.37
ABCA4P78363 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.33■□□□□ 0.37
ABCA4P78363 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA4P78363 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ABCA4P78363 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.33■□□□□ 0.36
ABCA4P78363 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.33■□□□□ 0.36
ABCA4P78363 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.33■□□□□ 0.36
ABCA4P78363 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.33■□□□□ 0.36
ABCA4P78363 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ABCA4P78363 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.32■□□□□ 0.36
ABCA4P78363 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.32■□□□□ 0.36
ABCA4P78363 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.32■□□□□ 0.36
ABCA4P78363 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.32■□□□□ 0.36
ABCA4P78363 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.32■□□□□ 0.36
ABCA4P78363 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 AL024507.2-201ENST00000606070 2574 ntBASIC17.32■□□□□ 0.36
ABCA4P78363 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
ABCA4P78363 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ABCA4P78363 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
ABCA4P78363 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 NTF6B-201ENST00000591913 560 ntBASIC17.32■□□□□ 0.36
ABCA4P78363 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ABCA4P78363 KRT8P36-201ENST00000489121 1440 ntBASIC17.31■□□□□ 0.36
ABCA4P78363 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.31■□□□□ 0.36
ABCA4P78363 KRT16P5-201ENST00000455284 522 ntBASIC17.31■□□□□ 0.36
ABCA4P78363 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCA4P78363 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ABCA4P78363 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms