Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YLR146W-AYLR146W-A 189 nt0.55□□□□□ -2.32
CUP9P41817 UPS1YLR193C 528 nt0.55□□□□□ -2.32
CUP9P41817 IRC16YPR038W 360 nt0.55□□□□□ -2.32
CUP9P41817 YLL032CYLL032C 2478 nt0.54□□□□□ -2.32
CUP9P41817 YHR139C-AYHR139C-A 312 nt0.54□□□□□ -2.32
CUP9P41817 YPR039WYPR039W 336 nt0.54□□□□□ -2.32
CUP9P41817 LCD1YDR499W 2244 nt0.54□□□□□ -2.32
CUP9P41817 VMA21YGR105W 234 nt0.53□□□□□ -2.32
CUP9P41817 RPL32YBL092W 393 nt0.53□□□□□ -2.32
CUP9P41817 YOR218CYOR218C 420 nt0.53□□□□□ -2.32
CUP9P41817 Q0255Q0255 1419 nt0.53□□□□□ -2.32
CUP9P41817 MMS4YBR098W 2076 nt0.52□□□□□ -2.33
CUP9P41817 SWI6YLR182W 2412 nt0.52□□□□□ -2.33
CUP9P41817 MRPL31YKL138C 396 nt0.52□□□□□ -2.33
CUP9P41817 RRT1YBL048W 312 nt0.52□□□□□ -2.33
CUP9P41817 YPR153WYPR153W 423 nt0.52□□□□□ -2.33
CUP9P41817 YER076W-AYER076W-A 348 nt0.51□□□□□ -2.33
CUP9P41817 YFR009W-AYFR009W-A 258 nt0.51□□□□□ -2.33
CUP9P41817 TRS65YGR166W 1683 nt0.51□□□□□ -2.33
CUP9P41817 YIL059CYIL059C 366 nt0.51□□□□□ -2.33
CUP9P41817 YKL044WYKL044W 321 nt0.51□□□□□ -2.33
CUP9P41817 IES4YOR189W 351 nt0.51□□□□□ -2.33
CUP9P41817 RFX1YLR176C 2436 nt0.5□□□□□ -2.33
CUP9P41817 YER135CYER135C 393 nt0.5□□□□□ -2.33
CUP9P41817 YKL023C-AYKL023C-A 228 nt0.5□□□□□ -2.33
CUP9P41817 ULP2YIL031W 3105 nt0.49□□□□□ -2.33
CUP9P41817 ALG13YGL047W 609 nt0.49□□□□□ -2.33
CUP9P41817 YGR042WYGR042W 816 nt0.49□□□□□ -2.33
CUP9P41817 APQ13YJL075C 417 nt0.49□□□□□ -2.33
CUP9P41817 ILM1YJR118C 612 nt0.49□□□□□ -2.33
CUP9P41817 YKL068W-AYKL068W-A 237 nt0.49□□□□□ -2.33
CUP9P41817 RCN2YOR220W 798 nt0.49□□□□□ -2.33
CUP9P41817 LTE1YAL024C 4308 nt0.48□□□□□ -2.33
CUP9P41817 MET32YDR253C 576 nt0.48□□□□□ -2.33
CUP9P41817 HUR1YGL168W 333 nt0.48□□□□□ -2.33
CUP9P41817 UBC7YMR022W 498 nt0.48□□□□□ -2.33
CUP9P41817 WAR1YML076C 2835 nt0.48□□□□□ -2.33
CUP9P41817 UTP10YJL109C 5310 nt0.48□□□□□ -2.33
CUP9P41817 SLI15YBR156C 2097 nt0.47□□□□□ -2.33
CUP9P41817 NPC2YDL046W 522 nt0.47□□□□□ -2.33
CUP9P41817 YML002WYML002W 2214 nt0.47□□□□□ -2.33
CUP9P41817 DBP6YNR038W 1890 nt0.47□□□□□ -2.33
CUP9P41817 YGL239CYGL239C 315 nt0.46□□□□□ -2.34
CUP9P41817 BER1YLR412W 825 nt0.46□□□□□ -2.34
CUP9P41817 YMR321CYMR321C 318 nt0.46□□□□□ -2.34
CUP9P41817 AI1Q0050 2505 nt0.46□□□□□ -2.34
CUP9P41817 FMP27YLR454W 7887 nt0.46□□□□□ -2.34
CUP9P41817 YJR141WYJR141W 1044 nt0.45□□□□□ -2.34
CUP9P41817 GEA2YEL022W 4380 nt0.45□□□□□ -2.34
CUP9P41817 PAN2YGL094C 3348 nt0.44□□□□□ -2.34
CUP9P41817 YDR269CYDR269C 324 nt0.44□□□□□ -2.34
CUP9P41817 ISD11YER048W-A 285 nt0.44□□□□□ -2.34
CUP9P41817 YGR025WYGR025W 303 nt0.44□□□□□ -2.34
CUP9P41817 ECM12YHR021W-A 456 nt0.44□□□□□ -2.34
CUP9P41817 YHR063W-AYHR063W-A 336 nt0.44□□□□□ -2.34
CUP9P41817 RPL38YLR325C 237 nt0.44□□□□□ -2.34
CUP9P41817 snR13snR13 124 nt0.44□□□□□ -2.34
CUP9P41817 BFR2YDR299W 1605 nt0.43□□□□□ -2.34
CUP9P41817 BIR1YJR089W 2865 nt0.43□□□□□ -2.34
CUP9P41817 YDL016CYDL016C 303 nt0.43□□□□□ -2.34
CUP9P41817 SVS1YPL163C 783 nt0.43□□□□□ -2.34
CUP9P41817 YLL007CYLL007C 1998 nt0.43□□□□□ -2.34
CUP9P41817 YHL042WYHL042W 453 nt0.42□□□□□ -2.34
CUP9P41817 LOA1YPR139C 903 nt0.42□□□□□ -2.34
CUP9P41817 ZIP2YGL249W 2115 nt0.41□□□□□ -2.34
CUP9P41817 UBX4YMR067C 1251 nt0.4□□□□□ -2.35
CUP9P41817 YSP1YHR155W 3687 nt0.39□□□□□ -2.35
CUP9P41817 GPG1YGL121C 381 nt0.39□□□□□ -2.35
CUP9P41817 SNU56YDR240C 1479 nt0.39□□□□□ -2.35
CUP9P41817 RPL9AYGL147C 576 nt0.38□□□□□ -2.35
CUP9P41817 YJL135WYJL135W 318 nt0.38□□□□□ -2.35
CUP9P41817 YMR141W-AYMR141W-A 225 nt0.38□□□□□ -2.35
CUP9P41817 YOR282WYOR282W 321 nt0.38□□□□□ -2.35
CUP9P41817 HMLALPHA2YCL067C 633 nt0.37□□□□□ -2.35
CUP9P41817 PMP1YCR024C-A 123 nt0.37□□□□□ -2.35
CUP9P41817 MATALPHA2YCR039C 633 nt0.37□□□□□ -2.35
CUP9P41817 YIL066W-AYIL066W-A 444 nt0.37□□□□□ -2.35
CUP9P41817 EFR3YMR212C 2349 nt0.37□□□□□ -2.35
CUP9P41817 CHS6YJL099W 2241 nt0.37□□□□□ -2.35
CUP9P41817 NOP9YJL010C 2001 nt0.37□□□□□ -2.35
CUP9P41817 YOR108C-AYOR108C-A 210 nt0.36□□□□□ -2.35
CUP9P41817 TSC3YBR058C-A 243 nt0.36□□□□□ -2.35
CUP9P41817 YDR029WYDR029W 315 nt0.35□□□□□ -2.35
CUP9P41817 YFL012WYFL012W 447 nt0.34□□□□□ -2.36
CUP9P41817 RPS27AYKL156W 249 nt0.34□□□□□ -2.36
CUP9P41817 YMR290W-AYMR290W-A 348 nt0.34□□□□□ -2.36
CUP9P41817 YPL182CYPL182C 384 nt0.34□□□□□ -2.36
CUP9P41817 IQG1YPL242C 4488 nt0.34□□□□□ -2.36
CUP9P41817 PKH2YOL100W 3246 nt0.33□□□□□ -2.36
CUP9P41817 NPR2YEL062W 1848 nt0.33□□□□□ -2.36
CUP9P41817 YKL202WYKL202W 582 nt0.32□□□□□ -2.36
CUP9P41817 YOL160WYOL160W 342 nt0.32□□□□□ -2.36
CUP9P41817 RPB10YOR210W 213 nt0.32□□□□□ -2.36
CUP9P41817 YBR076C-AYBR076C-A 267 nt0.32□□□□□ -2.36
CUP9P41817 YDR344CYDR344C 444 nt0.31□□□□□ -2.36
CUP9P41817 ABF2YMR072W 552 nt0.31□□□□□ -2.36
CUP9P41817 CDC33YOL139C 642 nt0.31□□□□□ -2.36
CUP9P41817 YPL261CYPL261C 309 nt0.31□□□□□ -2.36
CUP9P41817 RAD34YDR314C 2079 nt0.3□□□□□ -2.36
CUP9P41817 BIG1YHR101C 1008 nt0.3□□□□□ -2.36
Retrieved 100 of 7,029 protein–RNA pairs in 72.3 ms