Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 AC004408.2-201ENST00000623613 2777 ntBASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMEM56-RWDD3S4R434 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TMEM56-RWDD3S4R434 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC16.46■□□□□ 0.22
TMEM56-RWDD3S4R434 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
TMEM56-RWDD3S4R434 Z82202.1-201ENST00000623446 1880 ntBASIC16.46■□□□□ 0.22
TMEM56-RWDD3S4R434 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
TMEM56-RWDD3S4R434 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 SERP1-208ENST00000491660 830 ntTSL 2 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMEM56-RWDD3S4R434 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 AC079140.4-201ENST00000507448 529 ntBASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC16.44■□□□□ 0.22
TMEM56-RWDD3S4R434 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TMEM56-RWDD3S4R434 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TMEM56-RWDD3S4R434 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.43■□□□□ 0.22
TMEM56-RWDD3S4R434 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
TMEM56-RWDD3S4R434 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TMEM56-RWDD3S4R434 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
TMEM56-RWDD3S4R434 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms