Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 snR59snR59 78 nt0.38□□□□□ -2.35
RPL40AP0CH08 YBR032WYBR032W 303 nt0.38□□□□□ -2.35
RPL40AP0CH08 NUT1YGL151W 3399 nt0.38□□□□□ -2.35
RPL40AP0CH08 STO1YMR125W 2586 nt0.37□□□□□ -2.35
RPL40AP0CH08 PIG1YLR273C 1947 nt0.37□□□□□ -2.35
RPL40AP0CH08 LOC1YFR001W 615 nt0.37□□□□□ -2.35
RPL40AP0CH08 ALG13YGL047W 609 nt0.37□□□□□ -2.35
RPL40AP0CH08 YGR045CYGR045C 363 nt0.37□□□□□ -2.35
RPL40AP0CH08 ECM12YHR021W-A 456 nt0.37□□□□□ -2.35
RPL40AP0CH08 BMT5YIL096C 1011 nt0.37□□□□□ -2.35
RPL40AP0CH08 ATP20YPR020W 348 nt0.37□□□□□ -2.35
RPL40AP0CH08 YDL196WYDL196W 330 nt0.36□□□□□ -2.35
RPL40AP0CH08 IRC2YDR112W 309 nt0.36□□□□□ -2.35
RPL40AP0CH08 SWF1YDR126W 1011 nt0.36□□□□□ -2.35
RPL40AP0CH08 CMS1YLR003C 876 nt0.36□□□□□ -2.35
RPL40AP0CH08 YOP1YPR028W 543 nt0.36□□□□□ -2.35
RPL40AP0CH08 LYS14YDR034C 2373 nt0.35□□□□□ -2.35
RPL40AP0CH08 AI5_ALPHAQ0070 1893 nt0.35□□□□□ -2.35
RPL40AP0CH08 GLG1YKR058W 1851 nt0.35□□□□□ -2.35
RPL40AP0CH08 SCW11YGL028C 1629 nt0.35□□□□□ -2.35
RPL40AP0CH08 YDR003W-AYDR003W-A 123 nt0.35□□□□□ -2.35
RPL40AP0CH08 SRB7YDR308C 423 nt0.35□□□□□ -2.35
RPL40AP0CH08 YDR509WYDR509W 348 nt0.35□□□□□ -2.35
RPL40AP0CH08 snR79snR79 84 nt0.34□□□□□ -2.36
RPL40AP0CH08 HNT1YDL125C 477 nt0.34□□□□□ -2.36
RPL40AP0CH08 TDA2YER071C 381 nt0.34□□□□□ -2.36
RPL40AP0CH08 YHR050W-AYHR050W-A 171 nt0.34□□□□□ -2.36
RPL40AP0CH08 POL32YJR043C 1053 nt0.34□□□□□ -2.36
RPL40AP0CH08 YOR199WYOR199W 330 nt0.34□□□□□ -2.36
RPL40AP0CH08 VPS52YDR484W 1926 nt0.33□□□□□ -2.36
RPL40AP0CH08 NIP100YPL174C 2607 nt0.33□□□□□ -2.36
RPL40AP0CH08 YHR063W-AYHR063W-A 336 nt0.33□□□□□ -2.36
RPL40AP0CH08 COX3Q0275 810 nt0.33□□□□□ -2.36
RPL40AP0CH08 YOL106WYOL106W 354 nt0.33□□□□□ -2.36
RPL40AP0CH08 DBP6YNR038W 1890 nt0.33□□□□□ -2.36
RPL40AP0CH08 RRI2YOL117W 1938 nt0.32□□□□□ -2.36
RPL40AP0CH08 PDE2YOR360C 1581 nt0.32□□□□□ -2.36
RPL40AP0CH08 SDH2YLL041C 801 nt0.32□□□□□ -2.36
RPL40AP0CH08 RUF22RUF22 515 nt0.32□□□□□ -2.36
RPL40AP0CH08 YBL068W-AYBL068W-A 237 nt0.32□□□□□ -2.36
RPL40AP0CH08 YOR364WYOR364W 369 nt0.32□□□□□ -2.36
RPL40AP0CH08 SLM6YBR266C 453 nt0.32□□□□□ -2.36
RPL40AP0CH08 NUP120YKL057C 3114 nt0.31□□□□□ -2.36
RPL40AP0CH08 HTB1YDR224C 396 nt0.31□□□□□ -2.36
RPL40AP0CH08 YHR028W-AYHR028W-A 321 nt0.31□□□□□ -2.36
RPL40AP0CH08 YJR140W-AYJR140W-A 150 nt0.31□□□□□ -2.36
RPL40AP0CH08 COX7YMR256C 183 nt0.31□□□□□ -2.36
RPL40AP0CH08 RPL32YBL092W 393 nt0.31□□□□□ -2.36
RPL40AP0CH08 MKT1YNL085W 2493 nt0.3□□□□□ -2.36
RPL40AP0CH08 snR45snR45 172 nt0.3□□□□□ -2.36
RPL40AP0CH08 IPI3YNL182C 1668 nt0.3□□□□□ -2.36
RPL40AP0CH08 MMS4YBR098W 2076 nt0.29□□□□□ -2.36
RPL40AP0CH08 ACF4YJR083C 930 nt0.29□□□□□ -2.36
RPL40AP0CH08 tT(UGU)Q1tT(UGU)Q1 76 nt0.28□□□□□ -2.36
RPL40AP0CH08 YKL111CYKL111C 336 nt0.28□□□□□ -2.36
RPL40AP0CH08 SLD3YGL113W 2007 nt0.28□□□□□ -2.37
RPL40AP0CH08 YDL152WYDL152W 366 nt0.27□□□□□ -2.37
RPL40AP0CH08 OCA6YDR067C 675 nt0.27□□□□□ -2.37
RPL40AP0CH08 YJL007CYJL007C 315 nt0.27□□□□□ -2.37
RPL40AP0CH08 KAR1YNL188W 1302 nt0.27□□□□□ -2.37
RPL40AP0CH08 YDR114CYDR114C 303 nt0.26□□□□□ -2.37
RPL40AP0CH08 YER158W-AYER158W-A 216 nt0.26□□□□□ -2.37
RPL40AP0CH08 YNL150WYNL150W 408 nt0.26□□□□□ -2.37
RPL40AP0CH08 YBL100W-BYBL100W-B 5313 nt0.26□□□□□ -2.37
RPL40AP0CH08 ISD11YER048W-A 285 nt0.25□□□□□ -2.37
RPL40AP0CH08 YMR304C-AYMR304C-A 351 nt0.25□□□□□ -2.37
RPL40AP0CH08 YPL197CYPL197C 414 nt0.25□□□□□ -2.37
RPL40AP0CH08 LCD1YDR499W 2244 nt0.25□□□□□ -2.37
RPL40AP0CH08 TAD1YGL243W 1203 nt0.24□□□□□ -2.37
RPL40AP0CH08 LIN1YHR156C 1023 nt0.24□□□□□ -2.37
RPL40AP0CH08 YMR153C-AYMR153C-A 336 nt0.24□□□□□ -2.37
RPL40AP0CH08 YBR071WYBR071W 636 nt0.24□□□□□ -2.37
RPL40AP0CH08 BEM3YPL115C 3387 nt0.23□□□□□ -2.37
RPL40AP0CH08 UPS1YLR193C 528 nt0.23□□□□□ -2.37
RPL40AP0CH08 GMC2YLR445W 567 nt0.23□□□□□ -2.37
RPL40AP0CH08 PAN3YKL025C 2040 nt0.23□□□□□ -2.37
RPL40AP0CH08 snR84snR84 550 nt0.22□□□□□ -2.37
RPL40AP0CH08 MET32YDR253C 576 nt0.22□□□□□ -2.37
RPL40AP0CH08 QCR7YDR529C 384 nt0.22□□□□□ -2.37
RPL40AP0CH08 CUP1-1YHR053C 186 nt0.22□□□□□ -2.37
RPL40AP0CH08 CUP1-2YHR055C 186 nt0.22□□□□□ -2.37
RPL40AP0CH08 LRP1YHR081W 555 nt0.22□□□□□ -2.37
RPL40AP0CH08 TFB6YOR352W 1032 nt0.22□□□□□ -2.37
RPL40AP0CH08 YPR099CYPR099C 357 nt0.22□□□□□ -2.37
RPL40AP0CH08 SPO23YBR250W 1572 nt0.22□□□□□ -2.37
RPL40AP0CH08 BUD26YDR241W 288 nt0.21□□□□□ -2.38
RPL40AP0CH08 RSM27YGR215W 333 nt0.21□□□□□ -2.38
RPL40AP0CH08 YLR412C-AYLR412C-A 207 nt0.21□□□□□ -2.38
RPL40AP0CH08 RRT1YBL048W 312 nt0.21□□□□□ -2.38
RPL40AP0CH08 YNL146C-AYNL146C-A 195 nt0.21□□□□□ -2.38
RPL40AP0CH08 snR13snR13 124 nt0.21□□□□□ -2.38
RPL40AP0CH08 YOR282WYOR282W 321 nt0.21□□□□□ -2.38
RPL40AP0CH08 YPR170CYPR170C 336 nt0.21□□□□□ -2.38
RPL40AP0CH08 BFR2YDR299W 1605 nt0.2□□□□□ -2.38
RPL40AP0CH08 YAR053WYAR053W 297 nt0.2□□□□□ -2.38
RPL40AP0CH08 YLR217WYLR217W 324 nt0.2□□□□□ -2.38
RPL40AP0CH08 SPC2YML055W 537 nt0.2□□□□□ -2.38
RPL40AP0CH08 YPR153WYPR153W 423 nt0.2□□□□□ -2.38
RPL40AP0CH08 YBR121C-AYBR121C-A 159 nt0.2□□□□□ -2.38
RPL40AP0CH08 BI4Q0120 1917 nt0.19□□□□□ -2.38
Retrieved 100 of 7,029 protein–RNA pairs in 63.4 ms