Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 IRC23YOR044W 474 nt2.2□□□□□ -2.06
RPN11P43588 TUS1YLR425W 3924 nt2.2□□□□□ -2.06
RPN11P43588 SPF1YEL031W 3648 nt2.19□□□□□ -2.06
RPN11P43588 YBL012CYBL012C 402 nt2.19□□□□□ -2.06
RPN11P43588 YPR099CYPR099C 357 nt2.19□□□□□ -2.06
RPN11P43588 CCH1YGR217W 6120 nt2.19□□□□□ -2.06
RPN11P43588 SPO22YIL073C 2928 nt2.19□□□□□ -2.06
RPN11P43588 PHO2YDL106C 1680 nt2.18□□□□□ -2.06
RPN11P43588 YRB1YDR002W 606 nt2.18□□□□□ -2.06
RPN11P43588 YGL239CYGL239C 315 nt2.18□□□□□ -2.06
RPN11P43588 YJL020W-AYJL020W-A 258 nt2.18□□□□□ -2.06
RPN11P43588 YAL063C-AYAL063C-A 291 nt2.18□□□□□ -2.06
RPN11P43588 RPL40BYKR094C 387 nt2.18□□□□□ -2.06
RPN11P43588 CDC31YOR257W 486 nt2.18□□□□□ -2.06
RPN11P43588 YPL038W-AYPL038W-A 192 nt2.18□□□□□ -2.06
RPN11P43588 SAC3YDR159W 3906 nt2.18□□□□□ -2.06
RPN11P43588 SNF5YBR289W 2718 nt2.18□□□□□ -2.06
RPN11P43588 STB4YMR019W 2850 nt2.17□□□□□ -2.06
RPN11P43588 MRP10YDL045W-A 288 nt2.17□□□□□ -2.06
RPN11P43588 YFH1YDL120W 525 nt2.17□□□□□ -2.06
RPN11P43588 HOP2YGL033W 657 nt2.17□□□□□ -2.06
RPN11P43588 HSK3YKL138C-A 210 nt2.17□□□□□ -2.06
RPN11P43588 RPS17AYML024W 411 nt2.17□□□□□ -2.06
RPN11P43588 BIL1YOR304C-A 231 nt2.17□□□□□ -2.06
RPN11P43588 YOR093CYOR093C 4947 nt2.16□□□□□ -2.06
RPN11P43588 NHP2YDL208W 471 nt2.16□□□□□ -2.06
RPN11P43588 TIM9YEL020W-A 264 nt2.16□□□□□ -2.06
RPN11P43588 TIM13YGR181W 318 nt2.16□□□□□ -2.06
RPN11P43588 YKL136WYKL136W 399 nt2.16□□□□□ -2.06
RPN11P43588 YMR194C-AYMR194C-A 225 nt2.16□□□□□ -2.06
RPN11P43588 TIM18YOR297C 579 nt2.16□□□□□ -2.06
RPN11P43588 YPL182CYPL182C 384 nt2.16□□□□□ -2.06
RPN11P43588 DAD3YBR233W-A 285 nt2.16□□□□□ -2.06
RPN11P43588 PAN3YKL025C 2040 nt2.16□□□□□ -2.06
RPN11P43588 RIC1YLR039C 3171 nt2.15□□□□□ -2.06
RPN11P43588 CDC27YBL084C 2277 nt2.15□□□□□ -2.06
RPN11P43588 YNL277W-AYNL277W-A 189 nt2.15□□□□□ -2.07
RPN11P43588 RPL32YBL092W 393 nt2.15□□□□□ -2.07
RPN11P43588 YNL144CYNL144C 2223 nt2.15□□□□□ -2.07
RPN11P43588 CRM1YGR218W 3255 nt2.14□□□□□ -2.07
RPN11P43588 PEP3YLR148W 2757 nt2.14□□□□□ -2.07
RPN11P43588 YBL083CYBL083C 426 nt2.14□□□□□ -2.07
RPN11P43588 CFT1YDR301W 4074 nt2.14□□□□□ -2.07
RPN11P43588 SEF1YBL066C 3447 nt2.13□□□□□ -2.07
RPN11P43588 RPL27BYDR471W 411 nt2.13□□□□□ -2.07
RPN11P43588 YGR174W-AYGR174W-A 87 nt2.13□□□□□ -2.07
RPN11P43588 RPL42BYHR141C 321 nt2.13□□□□□ -2.07
RPN11P43588 ABM1YJR108W 372 nt2.13□□□□□ -2.07
RPN11P43588 YBL073WYBL073W 312 nt2.13□□□□□ -2.07
RPN11P43588 RPL42AYNL162W 321 nt2.13□□□□□ -2.07
RPN11P43588 MNL2YLR057W 2550 nt2.13□□□□□ -2.07
RPN11P43588 YLR149CYLR149C 2193 nt2.13□□□□□ -2.07
RPN11P43588 SMY1YKL079W 1971 nt2.12□□□□□ -2.07
RPN11P43588 YBR184WYBR184W 1572 nt2.12□□□□□ -2.07
RPN11P43588 YHL041WYHL041W 450 nt2.12□□□□□ -2.07
RPN11P43588 YNL146WYNL146W 303 nt2.12□□□□□ -2.07
RPN11P43588 AIM9YER080W 1884 nt2.11□□□□□ -2.07
RPN11P43588 PLC1YPL268W 2610 nt2.11□□□□□ -2.07
RPN11P43588 YDR413CYDR413C 576 nt2.11□□□□□ -2.07
RPN11P43588 RPA34YJL148W 702 nt2.11□□□□□ -2.07
RPN11P43588 RPS27AYKL156W 249 nt2.11□□□□□ -2.07
RPN11P43588 CHS1YNL192W 3396 nt2.1□□□□□ -2.07
RPN11P43588 PMD1YER132C 5262 nt2.1□□□□□ -2.07
RPN11P43588 YDL152WYDL152W 366 nt2.1□□□□□ -2.07
RPN11P43588 YKL118WYKL118W 312 nt2.1□□□□□ -2.07
RPN11P43588 YSY6YBR162W-A 198 nt2.1□□□□□ -2.07
RPN11P43588 CDC53YDL132W 2448 nt2.1□□□□□ -2.07
RPN11P43588 TOF2YKR010C 2316 nt2.09□□□□□ -2.07
RPN11P43588 YGR130CYGR130C 2451 nt2.09□□□□□ -2.07
RPN11P43588 SCH9YHR205W 2475 nt2.09□□□□□ -2.07
RPN11P43588 DNF3YMR162C 4971 nt2.09□□□□□ -2.07
RPN11P43588 VPS8YAL002W 3825 nt2.09□□□□□ -2.07
RPN11P43588 YLR154W-AYLR154W-A 186 nt2.09□□□□□ -2.07
RPN11P43588 YPL229WYPL229W 621 nt2.09□□□□□ -2.07
RPN11P43588 YHR214C-BYHR214C-B 5382 nt2.09□□□□□ -2.07
RPN11P43588 APL2YKL135C 2181 nt2.08□□□□□ -2.08
RPN11P43588 YDL062WYDL062W 426 nt2.08□□□□□ -2.08
RPN11P43588 YOR072W-AYOR072W-A 249 nt2.08□□□□□ -2.08
RPN11P43588 snR36snR36 182 nt2.08□□□□□ -2.08
RPN11P43588 MNE1YOR350C 1992 nt2.08□□□□□ -2.08
RPN11P43588 TRL1YJL087C 2484 nt2.08□□□□□ -2.08
RPN11P43588 NEO1YIL048W 3456 nt2.07□□□□□ -2.08
RPN11P43588 MMS22YLR320W 4365 nt2.07□□□□□ -2.08
RPN11P43588 YDR102CYDR102C 333 nt2.07□□□□□ -2.08
RPN11P43588 CSN9YDR179C 489 nt2.07□□□□□ -2.08
RPN11P43588 YDR286CYDR286C 345 nt2.07□□□□□ -2.08
RPN11P43588 VPS34YLR240W 2628 nt2.07□□□□□ -2.08
RPN11P43588 TOF1YNL273W 3717 nt2.07□□□□□ -2.08
RPN11P43588 FKS1YLR342W 5631 nt2.07□□□□□ -2.08
RPN11P43588 NOP14YDL148C 2433 nt2.07□□□□□ -2.08
RPN11P43588 RGA1YOR127W 3024 nt2.07□□□□□ -2.08
RPN11P43588 SLM1YIL105C 2061 nt2.06□□□□□ -2.08
RPN11P43588 BRR2YER172C 6492 nt2.06□□□□□ -2.08
RPN11P43588 LRE1YCL051W 1752 nt2.06□□□□□ -2.08
RPN11P43588 MDM20YOL076W 2391 nt2.06□□□□□ -2.08
RPN11P43588 YFL032WYFL032W 321 nt2.06□□□□□ -2.08
RPN11P43588 VMA9YCL005W-A 222 nt2.06□□□□□ -2.08
RPN11P43588 YBP1YBR216C 2025 nt2.06□□□□□ -2.08
RPN11P43588 MCM22YJR135C 720 nt2.05□□□□□ -2.08
RPN11P43588 SAR1YPL218W 573 nt2.05□□□□□ -2.08
Retrieved 100 of 7,029 protein–RNA pairs in 63.5 ms