Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AP002982.1-201ENST00000492365 877 ntBASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 AC092053.2-201ENST00000640557 1818 ntBASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 AC116050.2-201ENST00000612102 1779 ntBASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 FAM87A-204ENST00000613235 858 ntBASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC31.04■■■□□ 2.56
COL17A1Q9UMD9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 BET1L-202ENST00000332865 533 ntTSL 5 BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 LIN28AP1-201ENST00000429574 405 ntBASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL17A1Q9UMD9 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 INGX-201ENST00000359239 846 ntBASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 MESTP1-201ENST00000404287 994 ntBASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL17A1Q9UMD9 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 ATP5G1P1-201ENST00000448724 379 ntBASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 CLEC4GP1-201ENST00000596555 870 ntBASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 AC068473.5-201ENST00000616428 2072 ntBASIC31.01■■■□□ 2.56
COL17A1Q9UMD9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 NIFKP9-201ENST00000419265 221 ntBASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC31.01■■■□□ 2.55
COL17A1Q9UMD9 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL17A1Q9UMD9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC31■■■□□ 2.55
COL17A1Q9UMD9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC31■■■□□ 2.55
COL17A1Q9UMD9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC31■■■□□ 2.55
COL17A1Q9UMD9 PVRIG2P-201ENST00000435460 978 ntBASIC31■■■□□ 2.55
COL17A1Q9UMD9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC31■■■□□ 2.55
COL17A1Q9UMD9 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 TSPY14P-201ENST00000303979 915 ntBASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 LTK-203ENST00000453182 2412 ntTSL 2 BASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 AC026471.6-201ENST00000622954 1905 ntBASIC30.99■■■□□ 2.55
COL17A1Q9UMD9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL17A1Q9UMD9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms