Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 ROG1YGL144C 2058 nt3.3□□□□□ -1.88
UBP3Q01477 RCY1YJL204C 2523 nt3.3□□□□□ -1.88
UBP3Q01477 SCW11YGL028C 1629 nt3.3□□□□□ -1.88
UBP3Q01477 DYN2YDR424C 279 nt3.29□□□□□ -1.88
UBP3Q01477 GPG1YGL121C 381 nt3.29□□□□□ -1.88
UBP3Q01477 YJL150WYJL150W 303 nt3.29□□□□□ -1.88
UBP3Q01477 NMD2YHR077C 3270 nt3.29□□□□□ -1.88
UBP3Q01477 snR79snR79 84 nt3.28□□□□□ -1.88
UBP3Q01477 tF(GAA)DtF(GAA)D 73 nt3.28□□□□□ -1.88
UBP3Q01477 tF(GAA)NtF(GAA)N 73 nt3.28□□□□□ -1.88
UBP3Q01477 YGL239CYGL239C 315 nt3.28□□□□□ -1.88
UBP3Q01477 YJL222W-BYJL222W-B 138 nt3.28□□□□□ -1.88
UBP3Q01477 RAM2YKL019W 951 nt3.28□□□□□ -1.88
UBP3Q01477 CRS5YOR031W 210 nt3.28□□□□□ -1.88 RIP-Chip
UBP3Q01477 RGA2YDR379W 3030 nt3.27□□□□□ -1.89 RIP-Chip
UBP3Q01477 POL3YDL102W 3294 nt3.27□□□□□ -1.89
UBP3Q01477 TIM13YGR181W 318 nt3.27□□□□□ -1.89
UBP3Q01477 PHS1YJL097W 654 nt3.27□□□□□ -1.89
UBP3Q01477 STT4YLR305C 5703 nt3.27□□□□□ -1.89
UBP3Q01477 ASG1YIL130W 2895 nt3.27□□□□□ -1.89 RIP-Chip
UBP3Q01477 MSS11YMR164C 2277 nt3.27□□□□□ -1.89
UBP3Q01477 CHS2YBR038W 2892 nt3.26□□□□□ -1.89
UBP3Q01477 YER088C-AYER088C-A 324 nt3.26□□□□□ -1.89
UBP3Q01477 RPL36AYMR194W 303 nt3.26□□□□□ -1.89
UBP3Q01477 SDC25YLL016W 3147 nt3.26□□□□□ -1.89
UBP3Q01477 NAB3YPL190C 2409 nt3.25□□□□□ -1.89 RIP-Chip
UBP3Q01477 DIS3YOL021C 3006 nt3.25□□□□□ -1.89
UBP3Q01477 SOK2YMR016C 2358 nt3.25□□□□□ -1.89
UBP3Q01477 NFT1YKR103W 3657 nt3.25□□□□□ -1.89 RIP-Chip
UBP3Q01477 PRP39YML046W 1890 nt3.25□□□□□ -1.89
UBP3Q01477 YGL052WYGL052W 306 nt3.25□□□□□ -1.89
UBP3Q01477 YIL020C-AYIL020C-A 339 nt3.25□□□□□ -1.89
UBP3Q01477 YLR053CYLR053C 327 nt3.25□□□□□ -1.89 RIP-Chip
UBP3Q01477 DRS2YAL026C 4068 nt3.25□□□□□ -1.89
UBP3Q01477 HEH2YDR458C 1992 nt3.25□□□□□ -1.89 RIP-Chip
UBP3Q01477 MDM1YML104C 3384 nt3.25□□□□□ -1.89
UBP3Q01477 YKU70YMR284W 1809 nt3.24□□□□□ -1.89 RIP-Chip
UBP3Q01477 snR85snR85 171 nt3.24□□□□□ -1.89
UBP3Q01477 MDM20YOL076W 2391 nt3.23□□□□□ -1.89
UBP3Q01477 YPR089WYPR089W 2667 nt3.23□□□□□ -1.89
UBP3Q01477 tC(GCA)BtC(GCA)B 72 nt3.23□□□□□ -1.89
UBP3Q01477 tC(GCA)GtC(GCA)G 72 nt3.23□□□□□ -1.89
UBP3Q01477 tC(GCA)P1tC(GCA)P1 72 nt3.23□□□□□ -1.89
UBP3Q01477 tC(GCA)P2tC(GCA)P2 72 nt3.23□□□□□ -1.89
UBP3Q01477 COA4YLR218C 453 nt3.23□□□□□ -1.89
UBP3Q01477 YMR194C-AYMR194C-A 225 nt3.23□□□□□ -1.89
UBP3Q01477 YPR146CYPR146C 330 nt3.23□□□□□ -1.89
UBP3Q01477 ORC1YML065W 2745 nt3.23□□□□□ -1.89 RIP-Chip
UBP3Q01477 UTP14YML093W 2700 nt3.23□□□□□ -1.89
UBP3Q01477 PRP6YBR055C 2700 nt3.23□□□□□ -1.89
UBP3Q01477 SKT5YBL061C 2091 nt3.23□□□□□ -1.89
UBP3Q01477 YSP2YDR326C 4317 nt3.22□□□□□ -1.89
UBP3Q01477 KSP1YHR082C 3090 nt3.22□□□□□ -1.89 RIP-Chip
UBP3Q01477 tF(GAA)QtF(GAA)Q 75 nt3.22□□□□□ -1.89
UBP3Q01477 YNL010WYNL010W 726 nt3.22□□□□□ -1.89
UBP3Q01477 RPL25YOL127W 429 nt3.22□□□□□ -1.89
UBP3Q01477 YPR063CYPR063C 423 nt3.22□□□□□ -1.89
UBP3Q01477 RIM20YOR275C 1986 nt3.21□□□□□ -1.89
UBP3Q01477 PAU2YEL049W 363 nt3.21□□□□□ -1.9
UBP3Q01477 YHL041WYHL041W 450 nt3.21□□□□□ -1.9
UBP3Q01477 FRE2YKL220C 2136 nt3.21□□□□□ -1.9
UBP3Q01477 HHT1YBR010W 411 nt3.21□□□□□ -1.9 RIP-Chip
UBP3Q01477 YOR296WYOR296W 3870 nt3.21□□□□□ -1.9 RIP-Chip
UBP3Q01477 BFA1YJR053W 1725 nt3.21□□□□□ -1.9
UBP3Q01477 RSN1YMR266W 2862 nt3.21□□□□□ -1.9 RIP-Chip
UBP3Q01477 SUL1YBR294W 2580 nt3.2□□□□□ -1.9
UBP3Q01477 YMR141W-AYMR141W-A 225 nt3.2□□□□□ -1.9
UBP3Q01477 CYB5YNL111C 363 nt3.2□□□□□ -1.9
UBP3Q01477 MMS22YLR320W 4365 nt3.2□□□□□ -1.9
UBP3Q01477 SAK1YER129W 3429 nt3.2□□□□□ -1.9
UBP3Q01477 FLO1YAR050W 4614 nt3.2□□□□□ -1.9
UBP3Q01477 VIK1YPL253C 1944 nt3.19□□□□□ -1.9 RIP-Chip
UBP3Q01477 YJL135WYJL135W 318 nt3.19□□□□□ -1.9
UBP3Q01477 YMR324CYMR324C 243 nt3.19□□□□□ -1.9
UBP3Q01477 SAR1YPL218W 573 nt3.19□□□□□ -1.9
UBP3Q01477 SNQ2YDR011W 4506 nt3.19□□□□□ -1.9 RIP-Chip
UBP3Q01477 YIL082W-AYIL082W-A 4497 nt3.19□□□□□ -1.9
UBP3Q01477 GCD6YDR211W 2139 nt3.19□□□□□ -1.9 RIP-Chip
UBP3Q01477 VPS55YJR044C 423 nt3.18□□□□□ -1.9
UBP3Q01477 APC9YLR102C 798 nt3.18□□□□□ -1.9
UBP3Q01477 SPO14YKR031C 5052 nt3.17□□□□□ -1.9
UBP3Q01477 YLR140WYLR140W 327 nt3.17□□□□□ -1.9
UBP3Q01477 YBR121C-AYBR121C-A 159 nt3.17□□□□□ -1.9
UBP3Q01477 MSB2YGR014W 3921 nt3.16□□□□□ -1.9 RIP-Chip
UBP3Q01477 DBP10YDL031W 2988 nt3.16□□□□□ -1.9
UBP3Q01477 RGC1YPR115W 3252 nt3.16□□□□□ -1.9
UBP3Q01477 RAX2YLR084C 3663 nt3.16□□□□□ -1.9
UBP3Q01477 QCR7YDR529C 384 nt3.16□□□□□ -1.9
UBP3Q01477 AYR1YIL124W 894 nt3.16□□□□□ -1.9
UBP3Q01477 YLR012CYLR012C 300 nt3.16□□□□□ -1.9
UBP3Q01477 FUN30YAL019W 3396 nt3.16□□□□□ -1.9
UBP3Q01477 HRD3YLR207W 2502 nt3.16□□□□□ -1.9
UBP3Q01477 YME2YMR302C 2553 nt3.15□□□□□ -1.9 RIP-Chip
UBP3Q01477 RPL38YLR325C 237 nt3.15□□□□□ -1.91
UBP3Q01477 BUD4YJR092W 4344 nt3.15□□□□□ -1.91 RIP-Chip
UBP3Q01477 NPC2YDL046W 522 nt3.14□□□□□ -1.91
UBP3Q01477 GEA1YJR031C 4227 nt3.14□□□□□ -1.91 RIP-Chip
UBP3Q01477 INP53YOR109W 3324 nt3.14□□□□□ -1.91
UBP3Q01477 PTC5YOR090C 1719 nt3.13□□□□□ -1.91
UBP3Q01477 snR60snR60 104 nt3.13□□□□□ -1.91
Retrieved 100 of 7,029 protein–RNA pairs in 29.9 ms