Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ABCA4P78363 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ABCA4P78363 ARMC10P1-201ENST00000313754 855 ntBASIC17.52■□□□□ 0.4
ABCA4P78363 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
ABCA4P78363 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.52■□□□□ 0.4
ABCA4P78363 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
ABCA4P78363 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.52■□□□□ 0.4
ABCA4P78363 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
ABCA4P78363 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ABCA4P78363 AC087499.1-201ENST00000418141 1075 ntBASIC17.52■□□□□ 0.4
ABCA4P78363 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.52■□□□□ 0.4
ABCA4P78363 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
ABCA4P78363 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
ABCA4P78363 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA4P78363 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA4P78363 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA4P78363 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA4P78363 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
ABCA4P78363 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
ABCA4P78363 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ABCA4P78363 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.52■□□□□ 0.39
ABCA4P78363 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
ABCA4P78363 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA4P78363 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.51■□□□□ 0.39
ABCA4P78363 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.51■□□□□ 0.39
ABCA4P78363 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.51■□□□□ 0.39
ABCA4P78363 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA4P78363 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
ABCA4P78363 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA4P78363 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.51■□□□□ 0.39
ABCA4P78363 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.51■□□□□ 0.39
ABCA4P78363 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA4P78363 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA4P78363 TSPY15P-201ENST00000457163 923 ntBASIC17.51■□□□□ 0.39
ABCA4P78363 AL353708.3-201ENST00000610272 989 ntBASIC17.51■□□□□ 0.39
ABCA4P78363 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ABCA4P78363 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
ABCA4P78363 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.5■□□□□ 0.39
ABCA4P78363 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 AC124283.5-201ENST00000624661 1809 ntBASIC17.5■□□□□ 0.39
ABCA4P78363 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
ABCA4P78363 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.5■□□□□ 0.39
ABCA4P78363 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 KRT18P35-201ENST00000510488 1269 ntBASIC17.5■□□□□ 0.39
ABCA4P78363 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.5■□□□□ 0.39
ABCA4P78363 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ABCA4P78363 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.49■□□□□ 0.39
ABCA4P78363 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.49■□□□□ 0.39
ABCA4P78363 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 PGM5P4-201ENST00000421970 445 ntBASIC17.49■□□□□ 0.39
ABCA4P78363 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.49■□□□□ 0.39
ABCA4P78363 MYB-221ENST00000527615 2381 ntTSL 5 BASIC17.49■□□□□ 0.39
ABCA4P78363 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
ABCA4P78363 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.49■□□□□ 0.39
ABCA4P78363 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
ABCA4P78363 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.48■□□□□ 0.39
ABCA4P78363 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.48■□□□□ 0.39
ABCA4P78363 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC17.48■□□□□ 0.39
ABCA4P78363 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 AC242852.2-201ENST00000615738 1807 ntBASIC17.48■□□□□ 0.39
ABCA4P78363 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 KRASP1-201ENST00000407852 552 ntBASIC17.48■□□□□ 0.39
ABCA4P78363 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.48■□□□□ 0.39
ABCA4P78363 AC110285.5-201ENST00000611501 352 ntBASIC17.48■□□□□ 0.39
ABCA4P78363 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
ABCA4P78363 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
ABCA4P78363 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.48■□□□□ 0.39
ABCA4P78363 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms