RNA–Protein interactions for RNA: ENST00000366816.5

H3F3A-204, Transcript of H3 histone family member 3A, humanhuman

APPRIS P1 TSL 3 BASIC

Gene H3F3A, Length 799 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3A-204ENST00000366816 NISCHQ9Y2I1 1504 aa48.32■■■■■ 5.33
H3F3A-204ENST00000366816 CCDC180Q9P1Z9 1646 aa42.86■■■■■ 4.45
H3F3A-204ENST00000366816 ABCC9O60706 1549 aa42.19■■■■■ 4.34
H3F3A-204ENST00000366816 DCAF8L2P0C7V8 631 aa40.6■■■■■ 4.09
H3F3A-204ENST00000366816 RB1CC1Q8TDY2 1594 aa40.43■■■■■ 4.06
H3F3A-204ENST00000366816 NACADO15069 1562 aa40.35■■■■■ 4.05
H3F3A-204ENST00000366816 ZCCHC6Q5VYS8 1495 aaKnown RBP40.21■■■■■ 4.03
H3F3A-204ENST00000366816 MYO15BQ96JP2 1530 aa40.04■■■■■ 4
H3F3A-204ENST00000366816 DCAF1Q9Y4B6 1507 aa39.88■■■■□ 3.97
H3F3A-204ENST00000366816 UNC13AQ9UPW8 1703 aa39.53■■■■□ 3.92
H3F3A-204ENST00000366816 PABPN1Q86U42 306 aaKnown RBP eCLIP39.51■■■■□ 3.92
H3F3A-204ENST00000366816 BICRAQ9NZM4 1560 aa39.26■■■■□ 3.88
H3F3A-204ENST00000366816 SCRIBQ14160 1630 aa39.25■■■■□ 3.87
H3F3A-204ENST00000366816 DNAJC5BQ9UF47 199 aa38.86■■■■□ 3.81
H3F3A-204ENST00000366816 SHROOM4Q9ULL8 1493 aa38.67■■■■□ 3.78
H3F3A-204ENST00000366816 EIF4G1Q04637 1599 aaKnown RBP38.21■■■■□ 3.71
H3F3A-204ENST00000366816 CC2D2AQ9P2K1 1620 aa38.09■■■■□ 3.69
H3F3A-204ENST00000366816 CECR2Q9BXF3 1484 aa37.86■■■■□ 3.65
H3F3A-204ENST00000366816 SMARCA4P51532 1647 aa37.48■■■■□ 3.59
H3F3A-204ENST00000366816 BAZ1AQ9NRL2 1556 aaPredicted RBP37.42■■■■□ 3.58
H3F3A-204ENST00000366816 ATAD2BQ9ULI0 1458 aa37.33■■■■□ 3.57
H3F3A-204ENST00000366816 MROH2BQ7Z745 1585 aa37.29■■■■□ 3.56
H3F3A-204ENST00000366816 NCAPD3P42695 1498 aa37.28■■■■□ 3.56
H3F3A-204ENST00000366816 SMARCA2P51531 1590 aa37.21■■■■□ 3.55
H3F3A-204ENST00000366816 PEG3Q9GZU2 1588 aa37.07■■■■□ 3.52
H3F3A-204ENST00000366816 HMGXB3Q12766 1538 aa37.04■■■■□ 3.52
H3F3A-204ENST00000366816 BAZ1BQ9UIG0 1483 aaKnown RBP37.01■■■■□ 3.51
H3F3A-204ENST00000366816 WIZO95785 1651 aa36.88■■■■□ 3.49
H3F3A-204ENST00000366816 RSF1Q96T23 1441 aaPredicted RBP36.85■■■■□ 3.49
H3F3A-204ENST00000366816 NESP48681 1621 aa36.51■■■■□ 3.43
H3F3A-204ENST00000366816 TOP2AP11388 1531 aaKnown RBP36.42■■■■□ 3.42
H3F3A-204ENST00000366816 ERCC6Q03468 1493 aa36.32■■■■□ 3.41
H3F3A-204ENST00000366816 LAMC3Q9Y6N6 1575 aa36.26■■■■□ 3.39
H3F3A-204ENST00000366816 CADPSQ9ULU8 1353 aa36.23■■■■□ 3.39
H3F3A-204ENST00000366816 CCDC88BA6NC98 1476 aa36.07■■■■□ 3.37
H3F3A-204ENST00000366816 PDS5BQ9NTI5 1447 aa36.07■■■■□ 3.36
H3F3A-204ENST00000366816 SUPT5HO00267 1087 aaKnown RBP36.02■■■■□ 3.36
H3F3A-204ENST00000366816 KIF21AQ7Z4S6 1674 aa35.99■■■■□ 3.35
H3F3A-204ENST00000366816 CFTRP13569 1480 aa35.98■■■■□ 3.35
H3F3A-204ENST00000366816 CUX2O14529 1486 aa35.86■■■■□ 3.33
H3F3A-204ENST00000366816 THOC2Q8NI27 1593 aaKnown RBP35.85■■■■□ 3.33
H3F3A-204ENST00000366816 FANCD2Q9BXW9 1451 aa35.82■■■■□ 3.32
H3F3A-204ENST00000366816 CEP164Q9UPV0 1460 aa35.74■■■■□ 3.31
H3F3A-204ENST00000366816 MRC2Q9UBG0 1479 aa35.71■■■■□ 3.31
H3F3A-204ENST00000366816 PRDM2Q13029 1718 aa35.6■■■■□ 3.29
H3F3A-204ENST00000366816 WDR62O43379 1518 aa35.56■■■■□ 3.28
H3F3A-204ENST00000366816 URB2Q14146 1524 aaKnown RBP35.47■■■■□ 3.27
H3F3A-204ENST00000366816 TOPBP1Q92547 1522 aa35.23■■■■□ 3.23
H3F3A-204ENST00000366816 DNAJC5Q9H3Z4 198 aa35.19■■■■□ 3.22
H3F3A-204ENST00000366816 ABCC8Q09428 1581 aa35.14■■■■□ 3.22
H3F3A-204ENST00000366816 DNMBPQ6XZF7 1577 aa35.14■■■■□ 3.22
H3F3A-204ENST00000366816 IFT140Q96RY7 1462 aa34.99■■■■□ 3.19
H3F3A-204ENST00000366816 CUX1P39880 1505 aa34.96■■■■□ 3.19
H3F3A-204ENST00000366816 POLA1P09884 1462 aaPredicted RBP34.93■■■■□ 3.18
H3F3A-204ENST00000366816 ZNF608Q9ULD9 1512 aaPredicted RBP34.92■■■■□ 3.18
H3F3A-204ENST00000366816 FGD5Q6ZNL6 1462 aa34.85■■■■□ 3.17
H3F3A-204ENST00000366816 RAD54L2Q9Y4B4 1467 aa34.85■■■■□ 3.17
H3F3A-204ENST00000366816 TARBP1Q13395 1621 aaKnown RBP34.83■■■■□ 3.17
H3F3A-204ENST00000366816 SOGA1O94964 1423 aa34.82■■■■□ 3.17
H3F3A-204ENST00000366816 AQRO60306 1485 aaKnown RBP eCLIP34.74■■■■□ 3.153e-10■■■■□ 25
H3F3A-204ENST00000366816 WRNQ14191 1432 aaPredicted RBP eCLIP34.72■■■■□ 3.15
H3F3A-204ENST00000366816 EIF4G3O43432 1585 aaKnown RBP34.7■■■■□ 3.15
H3F3A-204ENST00000366816 TDRD9Q8NDG6 1382 aaKnown RBP34.69■■■■□ 3.14
H3F3A-204ENST00000366816 SYNJ1O43426 1573 aa34.65■■■■□ 3.14
H3F3A-204ENST00000366816 TOP2BQ02880 1626 aa34.6■■■■□ 3.13
H3F3A-204ENST00000366816 BIVM-ERCC5R4GMW8 1640 aa34.57■■■■□ 3.12
H3F3A-204ENST00000366816 OSCARQ8IYS5 282 aa34.49■■■■□ 3.11
H3F3A-204ENST00000366816 WDR97A6NE52 1622 aa34.48■■■■□ 3.11
H3F3A-204ENST00000366816 ABCA10Q8WWZ4 1543 aa34.47■■■■□ 3.11
H3F3A-204ENST00000366816 FBLN2P98095 1184 aa34.39■■■■□ 3.1
H3F3A-204ENST00000366816 GAPVD1Q14C86 1478 aa34.39■■■■□ 3.1
H3F3A-204ENST00000366816 GRIN2BQ13224 1484 aa34.37■■■■□ 3.09
H3F3A-204ENST00000366816 SNAPC4Q5SXM2 1469 aa34.36■■■■□ 3.09
H3F3A-204ENST00000366816 ABCA5Q8WWZ7 1642 aa34.32■■■■□ 3.08
H3F3A-204ENST00000366816 CHD1O14646 1710 aa34.28■■■■□ 3.08
H3F3A-204ENST00000366816 PBRM1Q86U86 1689 aa34.26■■■■□ 3.08
H3F3A-204ENST00000366816 MAGI1Q96QZ7 1491 aaPredicted RBP34.25■■■■□ 3.07
H3F3A-204ENST00000366816 CHMP7Q8WUX9 453 aaPredicted RBP34.23■■■■□ 3.07
H3F3A-204ENST00000366816 SYNJ2O15056 1496 aa34.14■■■■□ 3.06
H3F3A-204ENST00000366816 ERICH3Q5RHP9 1530 aa34.03■■■■□ 3.04
H3F3A-204ENST00000366816 ADAMTS12P58397 1594 aa34■■■■□ 3.03
H3F3A-204ENST00000366816 KIF27Q86VH2 1401 aa33.98■■■■□ 3.03
H3F3A-204ENST00000366816 FHAD1B1AJZ9 1412 aa33.97■■■■□ 3.03
H3F3A-204ENST00000366816 TRIM41Q8WV44 630 aa33.95■■■■□ 3.03
H3F3A-204ENST00000366816 GRIN2AQ12879 1464 aa33.94■■■■□ 3.02
H3F3A-204ENST00000366816 IGF1RP08069 1367 aa33.91■■■■□ 3.02
H3F3A-204ENST00000366816 RIMBP3CA6NJZ7 1639 aa33.9■■■■□ 3.02
H3F3A-204ENST00000366816 RIMBP3BA6NNM3 1639 aa33.9■■■■□ 3.02
H3F3A-204ENST00000366816 RIMBP3Q9UFD9 1639 aa33.9■■■■□ 3.02
H3F3A-204ENST00000366816 CLASP1Q7Z460 1538 aa33.89■■■■□ 3.02
H3F3A-204ENST00000366816 ARHGEF11O15085 1522 aa33.88■■■■□ 3.01
H3F3A-204ENST00000366816 CEP170Q5SW79 1584 aa33.79■■■■□ 3
H3F3A-204ENST00000366816 RUSC2Q8N2Y8 1516 aa33.78■■■■□ 3
H3F3A-204ENST00000366816 NUP160Q12769 1436 aa33.77■■■■□ 3
H3F3A-204ENST00000366816 CUL7Q14999 1698 aa33.69■■■□□ 2.98
H3F3A-204ENST00000366816 CYB5RLQ6IPT4 315 aa33.69■■■□□ 2.98
H3F3A-204ENST00000366816 CARMIL1Q5VZK9 1371 aa33.69■■■□□ 2.98
H3F3A-204ENST00000366816 ARAP1Q96P48 1450 aa33.63■■■□□ 2.97
H3F3A-204ENST00000366816 CHIC1Q5VXU3 224 aa33.54■■■□□ 2.96
H3F3A-204ENST00000366816 ERCC6L2Q5T890 1561 aa33.52■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms