Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC139530.1-201ENST00000575312 1977 ntBASIC31.14■■■□□ 2.58
COL17A1Q9UMD9 FAM8A6P-201ENST00000407496 1135 ntBASIC31.14■■■□□ 2.57
COL17A1Q9UMD9 AL390719.1-204ENST00000412397 1219 ntBASIC31.14■■■□□ 2.57
COL17A1Q9UMD9 AK4P3-201ENST00000418260 669 ntBASIC31.14■■■□□ 2.57
COL17A1Q9UMD9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC31.14■■■□□ 2.57
COL17A1Q9UMD9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL17A1Q9UMD9 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL17A1Q9UMD9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 IPPK-202ENST00000375522 882 ntTSL 3 BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 AC117947.1-201ENST00000427448 529 ntBASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 AP000550.4-202ENST00000639755 178 ntBASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL17A1Q9UMD9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 AC124283.5-201ENST00000624661 1809 ntBASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL17A1Q9UMD9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 SAPCD2P2-201ENST00000431719 1174 ntBASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 AC091390.4-202ENST00000476426 537 ntBASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC31.09■■■□□ 2.57
COL17A1Q9UMD9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 ECEL1P2-202ENST00000465689 757 ntBASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 COPE-203ENST00000351079 907 ntTSL 2 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC31.08■■■□□ 2.57
COL17A1Q9UMD9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC31.07■■■□□ 2.56
COL17A1Q9UMD9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL17A1Q9UMD9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL17A1Q9UMD9 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC31.06■■■□□ 2.56
COL17A1Q9UMD9 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
COL17A1Q9UMD9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC31.06■■■□□ 2.56
COL17A1Q9UMD9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC31.05■■■□□ 2.56
COL17A1Q9UMD9 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC31.05■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms