Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.94□□□□□ -0.184e-40■■■■■ 41.9
SMNDC1O75940 MALAT1-202ENST00000534336 8708 ntBASIC9.72□□□□□ -0.856e-64■■■■■ 41.9
SMNDC1O75940 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC8.42□□□□□ -1.064e-40■■■■■ 41.9
SMNDC1O75940 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC7.26□□□□□ -1.254e-40■■■■■ 41.9
SMNDC1O75940 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.49□□□□□ -1.374e-40■■■■■ 41.9
SMNDC1O75940 RPS13-209ENST00000533969 355 ntTSL 312.32□□□□□ -0.448e-19■■■■■ 41.6
SMNDC1O75940 KAT6A-208ENST00000485568 3592 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.865e-12■■■■■ 41.5
SMNDC1O75940 KAT6A-204ENST00000418721 3279 ntTSL 29.37□□□□□ -0.915e-12■■■■■ 41.5
SMNDC1O75940 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC8.84□□□□□ -0.995e-12■■■■■ 41.5
SMNDC1O75940 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.115e-12■■■■■ 41.5
SMNDC1O75940 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC7.51□□□□□ -1.215e-12■■■■■ 41.5
SMNDC1O75940 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.93e-7■■■■■ 41.5
SMNDC1O75940 MAST2-202ENST00000372008 2528 ntTSL 512.12□□□□□ -0.473e-7■■■■■ 41.5
SMNDC1O75940 MAST2-207ENST00000482881 858 ntTSL 37.92□□□□□ -1.143e-7■■■■■ 41.5
SMNDC1O75940 SNORD11B-201ENST00000607707 90 ntBASIC3.93□□□□□ -1.782e-22■■■■■ 41.3
SMNDC1O75940 RNU6-933P-201ENST00000384424 107 ntBASIC4.96□□□□□ -1.627e-9■■■■■ 41.2
SMNDC1O75940 TACC3-209ENST00000484651 2715 ntTSL 215.2■□□□□ 0.021e-6■■■■■ 40.9
SMNDC1O75940 RPL3-214ENST00000473638 523 ntTSL 215.91■□□□□ 0.149e-12■■■■■ 40.5
SMNDC1O75940 RPL3-210ENST00000464182 616 ntTSL 212.63□□□□□ -0.399e-12■■■■■ 40.5
SMNDC1O75940 GAS5-228ENST00000456812 723 ntTSL 36.23□□□□□ -1.412e-27■■■■■ 40.5
SMNDC1O75940 GAS5-206ENST00000422183 745 ntTSL 26.12□□□□□ -1.432e-27■■■■■ 40.5
SMNDC1O75940 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.29□□□□□ -1.562e-27■■■■■ 40.5
SMNDC1O75940 GAS5-213ENST00000436285 772 ntTSL 23.71□□□□□ -1.822e-27■■■■■ 40.5
SMNDC1O75940 KHDRBS1-203ENST00000484270 1989 ntTSL 518.72■□□□□ 0.593e-9■■■■■ 40
SMNDC1O75940 COX7C-204ENST00000510447 581 ntTSL 39.7□□□□□ -0.865e-22■■■■■ 39.9
SMNDC1O75940 COX7C-201ENST00000247655 666 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.985e-22■■■■■ 39.9
SMNDC1O75940 COX7C-207ENST00000515763 347 ntAPPRIS ALT1 TSL 4 BASIC8.94□□□□□ -0.985e-22■■■■■ 39.9
SMNDC1O75940 COX7C-203ENST00000509578 1584 ntAPPRIS P2 TSL 1 (best) BASIC7.01□□□□□ -1.295e-22■■■■■ 39.9
SMNDC1O75940 COX7C-206ENST00000513124 693 ntTSL 56.99□□□□□ -1.295e-22■■■■■ 39.9
SMNDC1O75940 COX7C-202ENST00000505430 496 ntTSL 36.09□□□□□ -1.435e-22■■■■■ 39.9
SMNDC1O75940 COX7C-205ENST00000511472 369 ntTSL 25.98□□□□□ -1.455e-22■■■■■ 39.9
SMNDC1O75940 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.63□□□□□ -2.675e-22■■■■■ 39.9
SMNDC1O75940 MIR3618-201ENST00000580330 88 ntBASIC2.79□□□□□ -1.962e-13■■■■■ 39.7
SMNDC1O75940 FASTK-203ENST00000459800 449 ntTSL 215.88■□□□□ 0.134e-10■■■■■ 39.7
SMNDC1O75940 EEF2-204ENST00000598182 581 ntTSL 212.15□□□□□ -0.462e-11■■■■■ 39.6
SMNDC1O75940 SNORD46.1-201ENST00000364139 104 ntBASIC3.28□□□□□ -1.882e-11■■■■■ 39.6
SMNDC1O75940 SNORA80C-201ENST00000362917 135 ntBASIC8.88□□□□□ -0.996e-19■■■■■ 39.5
SMNDC1O75940 RBM5-211ENST00000462025 573 ntTSL 411.03□□□□□ -0.642e-10■■■■■ 38.9
SMNDC1O75940 RBM5-203ENST00000404526 580 ntTSL 310.22□□□□□ -0.772e-10■■■■■ 38.9
SMNDC1O75940 RBM5-226ENST00000496179 1406 ntTSL 59.71□□□□□ -0.862e-10■■■■■ 38.9
SMNDC1O75940 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.892e-10■■■■■ 38.9
SMNDC1O75940 RBM5-212ENST00000464087 5616 ntTSL 28.37□□□□□ -1.072e-10■■■■■ 38.9
SMNDC1O75940 RBM5-202ENST00000395174 938 ntTSL 36.77□□□□□ -1.332e-10■■■■■ 38.9
SMNDC1O75940 MICU2-204ENST00000469058 830 ntTSL 519.65■□□□□ 0.742e-8■■■■■ 38.9
SMNDC1O75940 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.432e-8■■■■■ 38.9
SMNDC1O75940 MICU2-203ENST00000468222 742 ntTSL 516.44■□□□□ 0.222e-8■■■■■ 38.9
SMNDC1O75940 RNU6-582P-201ENST00000362989 107 ntBASIC6.57□□□□□ -1.362e-8■■■■■ 38.9
SMNDC1O75940 MICU2-205ENST00000476895 716 ntTSL 55.07□□□□□ -1.62e-8■■■■■ 38.9
SMNDC1O75940 RNU6-59P-201ENST00000384787 107 ntBASIC-0.55□□□□□ -2.52e-8■■■■■ 38.9
SMNDC1O75940 ENO1-202ENST00000464920 2266 ntTSL 1 (best)12.66□□□□□ -0.383e-11■■■■■ 38.7
SMNDC1O75940 RPL5-201ENST00000315741 681 ntTSL 512.41□□□□□ -0.423e-11■■■■■ 38.7
SMNDC1O75940 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.613e-11■■■■■ 38.7
SMNDC1O75940 RPL5-205ENST00000497519 1210 ntTSL 29.83□□□□□ -0.843e-11■■■■■ 38.7
SMNDC1O75940 RPS13-203ENST00000525828 664 ntTSL 215.46■□□□□ 0.077e-19■■■■■ 38.6
SMNDC1O75940 RPS13-204ENST00000526895 561 ntTSL 312.95□□□□□ -0.347e-19■■■■■ 38.6
SMNDC1O75940 RPS13-201ENST00000228140 491 ntTSL 2 BASIC9.44□□□□□ -0.97e-19■■■■■ 38.6
SMNDC1O75940 RPS13-208ENST00000531908 746 ntTSL 28.62□□□□□ -1.037e-19■■■■■ 38.6
SMNDC1O75940 RPS13-202ENST00000525634 646 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.037e-19■■■■■ 38.6
SMNDC1O75940 CYHR1-207ENST00000528558 907 ntTSL 219.63■□□□□ 0.731e-10■■■■■ 38.6
SMNDC1O75940 CYHR1-211ENST00000533173 6158 ntTSL 1 (best)15.39■□□□□ 0.051e-10■■■■■ 38.6
SMNDC1O75940 CYHR1-208ENST00000528663 5821 ntTSL 1 (best)15.09■□□□□ 0.011e-10■■■■■ 38.6
SMNDC1O75940 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.121e-10■■■■■ 38.6
SMNDC1O75940 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.32□□□□□ -0.281e-10■■■■■ 38.6
SMNDC1O75940 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.41e-10■■■■■ 38.6
SMNDC1O75940 AURKB-207ENST00000580998 746 ntTSL 311.4□□□□□ -0.581e-10■■■■■ 38.6
SMNDC1O75940 AURKB-204ENST00000578549 939 ntTSL 1 (best) BASIC10.15□□□□□ -0.781e-10■■■■■ 38.6
SMNDC1O75940 AURKB-209ENST00000582368 771 ntTSL 39.98□□□□□ -0.811e-10■■■■■ 38.6
SMNDC1O75940 AURKB-212ENST00000584561 1010 ntTSL 39.75□□□□□ -0.851e-10■■■■■ 38.6
SMNDC1O75940 AURKB-213ENST00000584972 739 ntTSL 39.65□□□□□ -0.861e-10■■■■■ 38.6
SMNDC1O75940 AURKB-206ENST00000580390 740 ntTSL 59.53□□□□□ -0.881e-10■■■■■ 38.6
SMNDC1O75940 AURKB-203ENST00000577833 867 ntTSL 39.26□□□□□ -0.931e-10■■■■■ 38.6
SMNDC1O75940 AURKB-205ENST00000578753 467 ntTSL 28.18□□□□□ -1.11e-10■■■■■ 38.6
SMNDC1O75940 AURKB-208ENST00000581511 742 ntTSL 56.84□□□□□ -1.311e-10■■■■■ 38.6
SMNDC1O75940 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.9□□□□□ -0.342e-27■■■■■ 38.4
SMNDC1O75940 GAS5-222ENST00000451607 1007 ntTSL 5 BASIC9.89□□□□□ -0.832e-27■■■■■ 38.4
SMNDC1O75940 GAS5-224ENST00000454068 688 ntTSL 5 BASIC8.73□□□□□ -1.012e-27■■■■■ 38.4
SMNDC1O75940 GAS5-214ENST00000436656 822 ntTSL 38.51□□□□□ -1.052e-27■■■■■ 38.4
SMNDC1O75940 GAS5-210ENST00000431268 1698 ntTSL 27.87□□□□□ -1.152e-27■■■■■ 38.4
SMNDC1O75940 GAS5-220ENST00000449589 712 ntTSL 37.31□□□□□ -1.242e-27■■■■■ 38.4
SMNDC1O75940 GAS5-219ENST00000449289 542 ntTSL 3 BASIC7.31□□□□□ -1.242e-27■■■■■ 38.4
SMNDC1O75940 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.53□□□□□ -1.522e-27■■■■■ 38.4
SMNDC1O75940 GAS5-201ENST00000412059 979 ntTSL 55.4□□□□□ -1.542e-27■■■■■ 38.4
SMNDC1O75940 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.68□□□□□ -1.662e-27■■■■■ 38.4
SMNDC1O75940 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.13■□□□□ 0.978e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-206ENST00000562746 2260 ntTSL 220.49■□□□□ 0.878e-9■■■■■ 38.1
SMNDC1O75940 RTEL1-210ENST00000496816 2222 ntTSL 1 (best)19.74■□□□□ 0.758e-9■■■■■ 38.1
SMNDC1O75940 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19■□□□□ 0.638e-9■■■■■ 38.1
SMNDC1O75940 CD99P1-205ENST00000527459 561 ntBASIC18.46■□□□□ 0.558e-9■■■■■ 38.1
SMNDC1O75940 RTEL1-TNFRSF6B-204ENST00000496281 5314 ntTSL 218.44■□□□□ 0.548e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-207ENST00000563578 1494 ntTSL 318.43■□□□□ 0.548e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-205ENST00000562346 570 ntTSL 417.9■□□□□ 0.468e-9■■■■■ 38.1
SMNDC1O75940 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.86■□□□□ 0.458e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-213ENST00000568202 1843 ntTSL 517.4■□□□□ 0.388e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.338e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-214ENST00000568528 543 nt16.74■□□□□ 0.278e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-215ENST00000569296 866 ntTSL 515.23■□□□□ 0.038e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-212ENST00000567739 583 ntTSL 214.84□□□□□ -0.038e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-218ENST00000527118 700 ntTSL 314.07□□□□□ -0.168e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.228e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-205ENST00000445722 580 ntTSL 213.11□□□□□ -0.318e-9■■■■■ 38.1
Retrieved 100 of 11,362 protein–RNA pairs in 250.4 ms