Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA4P78363 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA4P78363 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.65■□□□□ 0.42
ABCA4P78363 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA4P78363 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 RN7SL471P-201ENST00000580476 299 ntBASIC17.65■□□□□ 0.42
ABCA4P78363 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.65■□□□□ 0.42
ABCA4P78363 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ABCA4P78363 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.65■□□□□ 0.42
ABCA4P78363 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA4P78363 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ABCA4P78363 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ABCA4P78363 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
ABCA4P78363 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA4P78363 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 KRT17P2-201ENST00000300992 1314 ntBASIC17.64■□□□□ 0.41
ABCA4P78363 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.64■□□□□ 0.41
ABCA4P78363 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA4P78363 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.64■□□□□ 0.41
ABCA4P78363 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
ABCA4P78363 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA4P78363 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.64■□□□□ 0.41
ABCA4P78363 AC124016.1-201ENST00000609552 612 ntBASIC17.64■□□□□ 0.41
ABCA4P78363 AC133561.5-201ENST00000635547 218 ntBASIC17.64■□□□□ 0.41
ABCA4P78363 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA4P78363 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.63■□□□□ 0.41
ABCA4P78363 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
ABCA4P78363 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 AL355075.4-201ENST00000554988 638 ntBASIC17.63■□□□□ 0.41
ABCA4P78363 C2orf69P4-201ENST00000565394 541 ntBASIC17.63■□□□□ 0.41
ABCA4P78363 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA4P78363 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA4P78363 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
ABCA4P78363 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ABCA4P78363 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA4P78363 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
ABCA4P78363 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.63■□□□□ 0.41
ABCA4P78363 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA4P78363 AL023875.1-201ENST00000640777 796 ntBASIC17.63■□□□□ 0.41
ABCA4P78363 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.62■□□□□ 0.41
ABCA4P78363 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ABCA4P78363 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
ABCA4P78363 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.62■□□□□ 0.41
ABCA4P78363 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.62■□□□□ 0.41
ABCA4P78363 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.62■□□□□ 0.41
ABCA4P78363 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.62■□□□□ 0.41
ABCA4P78363 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
ABCA4P78363 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
ABCA4P78363 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.62■□□□□ 0.41
ABCA4P78363 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.62■□□□□ 0.41
ABCA4P78363 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA4P78363 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
ABCA4P78363 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ABCA4P78363 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms