RNA–Protein interactions for RNA: ENST00000579122.1

CDKN2A-213, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 3 BASIC

Gene CDKN2A, Length 666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-213ENST00000579122 NISCHQ9Y2I1 1504 aa48.42■■■■■ 5.34
CDKN2A-213ENST00000579122 ABCC9O60706 1549 aa43.62■■■■■ 4.57
CDKN2A-213ENST00000579122 CCDC180Q9P1Z9 1646 aa43.51■■■■■ 4.56
CDKN2A-213ENST00000579122 RB1CC1Q8TDY2 1594 aa41.5■■■■■ 4.23
CDKN2A-213ENST00000579122 NACADO15069 1562 aa41.19■■■■■ 4.18
CDKN2A-213ENST00000579122 DNAJC5BQ9UF47 199 aa41.05■■■■■ 4.16
CDKN2A-213ENST00000579122 DCAF8L2P0C7V8 631 aa40.87■■■■■ 4.13
CDKN2A-213ENST00000579122 MYO15BQ96JP2 1530 aa40.61■■■■■ 4.09
CDKN2A-213ENST00000579122 PABPN1Q86U42 306 aaKnown RBP eCLIP40.58■■■■■ 4.09
CDKN2A-213ENST00000579122 UNC13AQ9UPW8 1703 aa40.49■■■■■ 4.07
CDKN2A-213ENST00000579122 BICRAQ9NZM4 1560 aa40.27■■■■■ 4.04
CDKN2A-213ENST00000579122 ZCCHC6Q5VYS8 1495 aaKnown RBP40.1■■■■■ 4.01
CDKN2A-213ENST00000579122 DCAF1Q9Y4B6 1507 aa40.03■■■■■ 4
CDKN2A-213ENST00000579122 SHROOM4Q9ULL8 1493 aa39.8■■■■□ 3.96
CDKN2A-213ENST00000579122 SCRIBQ14160 1630 aa39.59■■■■□ 3.93
CDKN2A-213ENST00000579122 CC2D2AQ9P2K1 1620 aa39.41■■■■□ 3.9
CDKN2A-213ENST00000579122 CECR2Q9BXF3 1484 aa39.34■■■■□ 3.89
CDKN2A-213ENST00000579122 EIF4G1Q04637 1599 aaKnown RBP39.3■■■■□ 3.88
CDKN2A-213ENST00000579122 NCAPD3P42695 1498 aa38.03■■■■□ 3.68
CDKN2A-213ENST00000579122 ATAD2BQ9ULI0 1458 aa37.88■■■■□ 3.65
CDKN2A-213ENST00000579122 DNAJC5Q9H3Z4 198 aa37.84■■■■□ 3.65
CDKN2A-213ENST00000579122 SMARCA4P51532 1647 aa37.79■■■■□ 3.64
CDKN2A-213ENST00000579122 SMARCA2P51531 1590 aa37.77■■■■□ 3.64
CDKN2A-213ENST00000579122 HMGXB3Q12766 1538 aa37.73■■■■□ 3.63
CDKN2A-213ENST00000579122 CUX2O14529 1486 aa37.71■■■■□ 3.63
CDKN2A-213ENST00000579122 ERCC6Q03468 1493 aa37.69■■■■□ 3.62
CDKN2A-213ENST00000579122 BAZ1AQ9NRL2 1556 aaPredicted RBP37.6■■■■□ 3.61
CDKN2A-213ENST00000579122 BAZ1BQ9UIG0 1483 aaKnown RBP37.5■■■■□ 3.59
CDKN2A-213ENST00000579122 PEG3Q9GZU2 1588 aa37.46■■■■□ 3.59
CDKN2A-213ENST00000579122 NESP48681 1621 aa37.43■■■■□ 3.58
CDKN2A-213ENST00000579122 MROH2BQ7Z745 1585 aa37.28■■■■□ 3.56
CDKN2A-213ENST00000579122 LAMC3Q9Y6N6 1575 aa37.19■■■■□ 3.54
CDKN2A-213ENST00000579122 THOC2Q8NI27 1593 aaKnown RBP37.1■■■■□ 3.53
CDKN2A-213ENST00000579122 PDS5BQ9NTI5 1447 aa36.99■■■■□ 3.51
CDKN2A-213ENST00000579122 KIF21AQ7Z4S6 1674 aa36.93■■■■□ 3.5
CDKN2A-213ENST00000579122 CADPSQ9ULU8 1353 aa36.86■■■■□ 3.49
CDKN2A-213ENST00000579122 WIZO95785 1651 aa36.8■■■■□ 3.48
CDKN2A-213ENST00000579122 MRC2Q9UBG0 1479 aa36.66■■■■□ 3.46
CDKN2A-213ENST00000579122 WDR62O43379 1518 aa36.58■■■■□ 3.45
CDKN2A-213ENST00000579122 CEP164Q9UPV0 1460 aa36.49■■■■□ 3.43
CDKN2A-213ENST00000579122 RSF1Q96T23 1441 aaPredicted RBP36.48■■■■□ 3.43
CDKN2A-213ENST00000579122 FANCD2Q9BXW9 1451 aa36.43■■■■□ 3.42
CDKN2A-213ENST00000579122 CFTRP13569 1480 aa36.42■■■■□ 3.42
CDKN2A-213ENST00000579122 TOP2AP11388 1531 aaKnown RBP36.38■■■■□ 3.41
CDKN2A-213ENST00000579122 URB2Q14146 1524 aaKnown RBP36.13■■■■□ 3.38
CDKN2A-213ENST00000579122 TRIM41Q8WV44 630 aa36.07■■■■□ 3.36
CDKN2A-213ENST00000579122 PRDM2Q13029 1718 aa35.99■■■■□ 3.35
CDKN2A-213ENST00000579122 CCDC88BA6NC98 1476 aa35.95■■■■□ 3.35
CDKN2A-213ENST00000579122 OSCARQ8IYS5 282 aa35.95■■■■□ 3.35
CDKN2A-213ENST00000579122 IFT140Q96RY7 1462 aa35.78■■■■□ 3.32
CDKN2A-213ENST00000579122 TOPBP1Q92547 1522 aa35.72■■■■□ 3.31
CDKN2A-213ENST00000579122 ZNF608Q9ULD9 1512 aaPredicted RBP35.69■■■■□ 3.3
CDKN2A-213ENST00000579122 ABCC8Q09428 1581 aa35.67■■■■□ 3.3
CDKN2A-213ENST00000579122 DNMBPQ6XZF7 1577 aa35.58■■■■□ 3.29
CDKN2A-213ENST00000579122 EIF4G3O43432 1585 aaKnown RBP35.5■■■■□ 3.27
CDKN2A-213ENST00000579122 RIMBP3CA6NJZ7 1639 aa35.47■■■■□ 3.27
CDKN2A-213ENST00000579122 RIMBP3BA6NNM3 1639 aa35.47■■■■□ 3.27
CDKN2A-213ENST00000579122 RIMBP3Q9UFD9 1639 aa35.47■■■■□ 3.27
CDKN2A-213ENST00000579122 TARBP1Q13395 1621 aaKnown RBP35.42■■■■□ 3.26
CDKN2A-213ENST00000579122 AQRO60306 1485 aaKnown RBP eCLIP35.36■■■■□ 3.25
CDKN2A-213ENST00000579122 ARHGEF11O15085 1522 aa35.36■■■■□ 3.25
CDKN2A-213ENST00000579122 POLA1P09884 1462 aaPredicted RBP35.35■■■■□ 3.25
CDKN2A-213ENST00000579122 CHD1O14646 1710 aa35.23■■■■□ 3.23
CDKN2A-213ENST00000579122 RAD54L2Q9Y4B4 1467 aa35.2■■■■□ 3.23
CDKN2A-213ENST00000579122 SOGA1O94964 1423 aa35.18■■■■□ 3.22
CDKN2A-213ENST00000579122 FBLN2P98095 1184 aa35.14■■■■□ 3.22
CDKN2A-213ENST00000579122 TDRD9Q8NDG6 1382 aaKnown RBP35.12■■■■□ 3.21
CDKN2A-213ENST00000579122 FGD5Q6ZNL6 1462 aa35.09■■■■□ 3.21
CDKN2A-213ENST00000579122 CYB5RLQ6IPT4 315 aa35.09■■■■□ 3.21
CDKN2A-213ENST00000579122 WDR97A6NE52 1622 aa35.09■■■■□ 3.21
CDKN2A-213ENST00000579122 CUX1P39880 1505 aa35.04■■■■□ 3.2
CDKN2A-213ENST00000579122 SNAPC4Q5SXM2 1469 aa35■■■■□ 3.19
CDKN2A-213ENST00000579122 ARAP1Q96P48 1450 aa34.99■■■■□ 3.19
CDKN2A-213ENST00000579122 MAGI1Q96QZ7 1491 aaPredicted RBP34.93■■■■□ 3.18
CDKN2A-213ENST00000579122 GRIN2BQ13224 1484 aa34.91■■■■□ 3.18
CDKN2A-213ENST00000579122 CHMP7Q8WUX9 453 aaPredicted RBP34.89■■■■□ 3.18
CDKN2A-213ENST00000579122 CLASP1Q7Z460 1538 aa34.87■■■■□ 3.17
CDKN2A-213ENST00000579122 SYNJ1O43426 1573 aa34.84■■■■□ 3.17
CDKN2A-213ENST00000579122 SYNJ2O15056 1496 aa34.81■■■■□ 3.16
CDKN2A-213ENST00000579122 GAPVD1Q14C86 1478 aa34.76■■■■□ 3.15
CDKN2A-213ENST00000579122 TRHP20396 242 aaPredicted RBP34.74■■■■□ 3.15
CDKN2A-213ENST00000579122 PBRM1Q86U86 1689 aa34.72■■■■□ 3.15
CDKN2A-213ENST00000579122 ABCA10Q8WWZ4 1543 aa34.71■■■■□ 3.15
CDKN2A-213ENST00000579122 SUPT5HO00267 1087 aaKnown RBP34.7■■■■□ 3.15
CDKN2A-213ENST00000579122 ABCA5Q8WWZ7 1642 aa34.66■■■■□ 3.14
CDKN2A-213ENST00000579122 WRNQ14191 1432 aaPredicted RBP eCLIP34.55■■■■□ 3.12
CDKN2A-213ENST00000579122 GRIN2AQ12879 1464 aa34.46■■■■□ 3.11
CDKN2A-213ENST00000579122 TOP2BQ02880 1626 aa34.45■■■■□ 3.11
CDKN2A-213ENST00000579122 BIVM-ERCC5R4GMW8 1640 aa34.45■■■■□ 3.11
CDKN2A-213ENST00000579122 ADAMTS12P58397 1594 aa34.4■■■■□ 3.1
CDKN2A-213ENST00000579122 NUP160Q12769 1436 aa34.36■■■■□ 3.09
CDKN2A-213ENST00000579122 FHAD1B1AJZ9 1412 aa34.32■■■■□ 3.08
CDKN2A-213ENST00000579122 CEP170Q5SW79 1584 aa34.32■■■■□ 3.08
CDKN2A-213ENST00000579122 ERCC6L2Q5T890 1561 aa34.28■■■■□ 3.08
CDKN2A-213ENST00000579122 ERICH3Q5RHP9 1530 aa34.28■■■■□ 3.08
CDKN2A-213ENST00000579122 SHROOM2Q13796 1616 aa34.21■■■■□ 3.07
CDKN2A-213ENST00000579122 PRG4Q92954 1404 aaPredicted RBP34.02■■■■□ 3.04
CDKN2A-213ENST00000579122 JPH4Q96JJ6 628 aa33.99■■■■□ 3.03
CDKN2A-213ENST00000579122 RUSC2Q8N2Y8 1516 aa33.93■■■■□ 3.02
CDKN2A-213ENST00000579122 AEBP2Q6ZN18 517 aaPredicted RBP33.84■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms