Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PCDHAC2-203ENST00000615316 3011 ntBASIC19.73■□□□□ 0.75
LSM1O15116 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.73■□□□□ 0.75
LSM1O15116 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.72■□□□□ 0.75
LSM1O15116 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM1O15116 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM1O15116 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LSM1O15116 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM1O15116 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LSM1O15116 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM1O15116 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.72■□□□□ 0.75
LSM1O15116 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.72■□□□□ 0.75
LSM1O15116 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.72■□□□□ 0.75
LSM1O15116 AC120498.10-201ENST00000621827 505 ntBASIC19.72■□□□□ 0.75
LSM1O15116 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.72■□□□□ 0.75
LSM1O15116 AC007952.6-201ENST00000573168 2673 ntBASIC19.72■□□□□ 0.75
LSM1O15116 AC003957.1-201ENST00000625108 2673 ntBASIC19.72■□□□□ 0.75
LSM1O15116 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.72■□□□□ 0.75
LSM1O15116 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM1O15116 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
LSM1O15116 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.72■□□□□ 0.75
LSM1O15116 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LSM1O15116 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LSM1O15116 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LSM1O15116 AC112907.3-201ENST00000577781 2400 ntBASIC19.71■□□□□ 0.75
LSM1O15116 AC099778.1-201ENST00000568593 1911 ntBASIC19.71■□□□□ 0.75
LSM1O15116 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LSM1O15116 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.71■□□□□ 0.75
LSM1O15116 AC104187.1-201ENST00000607510 612 ntBASIC19.71■□□□□ 0.75
LSM1O15116 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.71■□□□□ 0.75
LSM1O15116 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LSM1O15116 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.71■□□□□ 0.75
LSM1O15116 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LSM1O15116 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.71■□□□□ 0.75
LSM1O15116 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.7■□□□□ 0.74
LSM1O15116 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L2-201ENST00000561772 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L6-201ENST00000626483 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L1-201ENST00000627662 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L8-201ENST00000629013 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L3-201ENST00000630187 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L7-201ENST00000630678 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 DUX4L5-201ENST00000630834 1275 ntBASIC19.7■□□□□ 0.74
LSM1O15116 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 AC092720.2-201ENST00000602388 1665 ntBASIC19.7■□□□□ 0.74
LSM1O15116 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.7■□□□□ 0.74
LSM1O15116 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LSM1O15116 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.7■□□□□ 0.74
LSM1O15116 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LSM1O15116 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
LSM1O15116 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
LSM1O15116 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.69■□□□□ 0.74
LSM1O15116 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.69■□□□□ 0.74
LSM1O15116 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.69■□□□□ 0.74
LSM1O15116 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LSM1O15116 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LSM1O15116 AFG3L1P-217ENST00000557444 2447 ntBASIC19.69■□□□□ 0.74
LSM1O15116 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.69■□□□□ 0.74
LSM1O15116 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.69■□□□□ 0.74
LSM1O15116 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LSM1O15116 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LSM1O15116 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.69■□□□□ 0.74
LSM1O15116 SLC7A5P2-201ENST00000553010 536 ntBASIC19.69■□□□□ 0.74
LSM1O15116 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.69■□□□□ 0.74
LSM1O15116 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LSM1O15116 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
LSM1O15116 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.69■□□□□ 0.74
LSM1O15116 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms