Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
COL17A1Q9UMD9 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 SLC25A3P1-201ENST00000443844 931 ntBASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 AC245052.3-201ENST00000450182 901 ntBASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 HES2-206ENST00000489730 730 ntTSL 2 BASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 AC005829.2-201ENST00000571422 1056 ntBASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 AC010947.1-201ENST00000623454 693 ntBASIC31.59■■■□□ 2.65
COL17A1Q9UMD9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 FAM197Y1-201ENST00000421178 764 ntBASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC31.58■■■□□ 2.65
COL17A1Q9UMD9 ABCB10P4-201ENST00000566803 2184 ntBASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 UPK3BP1-201ENST00000428678 509 ntBASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 KRT126P-201ENST00000549467 1181 ntBASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 REXO1L10P-201ENST00000615707 1290 ntBASIC31.57■■■□□ 2.64
COL17A1Q9UMD9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL17A1Q9UMD9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 AL137013.1-201ENST00000432946 1228 ntBASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 AC093323.1-202ENST00000635031 2045 ntBASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL17A1Q9UMD9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC31.54■■■□□ 2.64
COL17A1Q9UMD9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL17A1Q9UMD9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL17A1Q9UMD9 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC31.53■■■□□ 2.64
COL17A1Q9UMD9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL17A1Q9UMD9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL17A1Q9UMD9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms