RNA–Protein interactions for RNA: ENST00000498058.1

PRKCB-209, Transcript of protein kinase C beta, humanhuman

TSL 3 BASIC

Gene PRKCB, Length 480 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-209ENST00000498058 NISCHQ9Y2I1 1504 aa46.62■■■■■ 5.05
PRKCB-209ENST00000498058 ABCC9O60706 1549 aa41.78■■■■■ 4.28
PRKCB-209ENST00000498058 CCDC180Q9P1Z9 1646 aa41.76■■■■■ 4.28
PRKCB-209ENST00000498058 RB1CC1Q8TDY2 1594 aa39.71■■■■□ 3.95
PRKCB-209ENST00000498058 NACADO15069 1562 aa39.46■■■■□ 3.91
PRKCB-209ENST00000498058 DCAF8L2P0C7V8 631 aa39.29■■■■□ 3.88
PRKCB-209ENST00000498058 DNAJC5BQ9UF47 199 aa39.25■■■■□ 3.87
PRKCB-209ENST00000498058 UNC13AQ9UPW8 1703 aa38.95■■■■□ 3.83
PRKCB-209ENST00000498058 PABPN1Q86U42 306 aaKnown RBP eCLIP38.93■■■■□ 3.82
PRKCB-209ENST00000498058 MYO15BQ96JP2 1530 aa38.92■■■■□ 3.82
PRKCB-209ENST00000498058 BICRAQ9NZM4 1560 aa38.68■■■■□ 3.78
PRKCB-209ENST00000498058 ZCCHC6Q5VYS8 1495 aaKnown RBP38.65■■■■□ 3.78
PRKCB-209ENST00000498058 DCAF1Q9Y4B6 1507 aa38.47■■■■□ 3.75
PRKCB-209ENST00000498058 SCRIBQ14160 1630 aa38.12■■■■□ 3.69
PRKCB-209ENST00000498058 SHROOM4Q9ULL8 1493 aa37.98■■■■□ 3.67
PRKCB-209ENST00000498058 CC2D2AQ9P2K1 1620 aa37.74■■■■□ 3.63
PRKCB-209ENST00000498058 EIF4G1Q04637 1599 aaKnown RBP37.66■■■■□ 3.62
PRKCB-209ENST00000498058 CECR2Q9BXF3 1484 aa37.59■■■■□ 3.61
PRKCB-209ENST00000498058 NCAPD3P42695 1498 aa36.46■■■■□ 3.43
PRKCB-209ENST00000498058 ATAD2BQ9ULI0 1458 aa36.38■■■■□ 3.41
PRKCB-209ENST00000498058 SMARCA4P51532 1647 aa36.36■■■■□ 3.41
PRKCB-209ENST00000498058 SMARCA2P51531 1590 aa36.21■■■■□ 3.39
PRKCB-209ENST00000498058 HMGXB3Q12766 1538 aa36.17■■■■□ 3.38
PRKCB-209ENST00000498058 BAZ1AQ9NRL2 1556 aaPredicted RBP36.13■■■■□ 3.37
PRKCB-209ENST00000498058 PEG3Q9GZU2 1588 aa35.99■■■■□ 3.35
PRKCB-209ENST00000498058 BAZ1BQ9UIG0 1483 aaKnown RBP35.98■■■■□ 3.35
PRKCB-209ENST00000498058 MROH2BQ7Z745 1585 aa35.98■■■■□ 3.35
PRKCB-209ENST00000498058 ERCC6Q03468 1493 aa35.97■■■■□ 3.35
PRKCB-209ENST00000498058 NESP48681 1621 aa35.95■■■■□ 3.35
PRKCB-209ENST00000498058 CUX2O14529 1486 aa35.9■■■■□ 3.34
PRKCB-209ENST00000498058 DNAJC5Q9H3Z4 198 aa35.88■■■■□ 3.33
PRKCB-209ENST00000498058 LAMC3Q9Y6N6 1575 aa35.59■■■■□ 3.29
PRKCB-209ENST00000498058 WIZO95785 1651 aa35.55■■■■□ 3.28
PRKCB-209ENST00000498058 THOC2Q8NI27 1593 aaKnown RBP35.54■■■■□ 3.28
PRKCB-209ENST00000498058 KIF21AQ7Z4S6 1674 aa35.46■■■■□ 3.27
PRKCB-209ENST00000498058 PDS5BQ9NTI5 1447 aa35.36■■■■□ 3.25
PRKCB-209ENST00000498058 CADPSQ9ULU8 1353 aa35.35■■■■□ 3.25
PRKCB-209ENST00000498058 RSF1Q96T23 1441 aaPredicted RBP35.23■■■■□ 3.23
PRKCB-209ENST00000498058 MRC2Q9UBG0 1479 aa35.09■■■■□ 3.21
PRKCB-209ENST00000498058 WDR62O43379 1518 aa35.03■■■■□ 3.2
PRKCB-209ENST00000498058 TOP2AP11388 1531 aaKnown RBP35.03■■■■□ 3.2
PRKCB-209ENST00000498058 CFTRP13569 1480 aa34.97■■■■□ 3.19
PRKCB-209ENST00000498058 FANCD2Q9BXW9 1451 aa34.96■■■■□ 3.19
PRKCB-209ENST00000498058 CEP164Q9UPV0 1460 aa34.96■■■■□ 3.19
PRKCB-209ENST00000498058 URB2Q14146 1524 aaKnown RBP34.71■■■■□ 3.15
PRKCB-209ENST00000498058 CCDC88BA6NC98 1476 aa34.68■■■■□ 3.14
PRKCB-209ENST00000498058 PRDM2Q13029 1718 aa34.62■■■■□ 3.13
PRKCB-209ENST00000498058 TOPBP1Q92547 1522 aa34.32■■■■□ 3.08
PRKCB-209ENST00000498058 TRIM41Q8WV44 630 aa34.32■■■■□ 3.08
PRKCB-209ENST00000498058 ZNF608Q9ULD9 1512 aaPredicted RBP34.3■■■■□ 3.08
PRKCB-209ENST00000498058 OSCARQ8IYS5 282 aa34.27■■■■□ 3.08
PRKCB-209ENST00000498058 IFT140Q96RY7 1462 aa34.25■■■■□ 3.07
PRKCB-209ENST00000498058 DNMBPQ6XZF7 1577 aa34.17■■■■□ 3.06
PRKCB-209ENST00000498058 ABCC8Q09428 1581 aa34.14■■■■□ 3.06
PRKCB-209ENST00000498058 EIF4G3O43432 1585 aaKnown RBP34.06■■■■□ 3.04
PRKCB-209ENST00000498058 TARBP1Q13395 1621 aaKnown RBP34.04■■■■□ 3.04
PRKCB-209ENST00000498058 AQRO60306 1485 aaKnown RBP eCLIP33.97■■■■□ 3.032e-8■■■■□ 26.2
PRKCB-209ENST00000498058 POLA1P09884 1462 aaPredicted RBP33.97■■■■□ 3.03
PRKCB-209ENST00000498058 RIMBP3CA6NJZ7 1639 aa33.9■■■■□ 3.02
PRKCB-209ENST00000498058 RIMBP3BA6NNM3 1639 aa33.9■■■■□ 3.02
PRKCB-209ENST00000498058 RIMBP3Q9UFD9 1639 aa33.9■■■■□ 3.02
PRKCB-209ENST00000498058 RAD54L2Q9Y4B4 1467 aa33.89■■■■□ 3.02
PRKCB-209ENST00000498058 CHD1O14646 1710 aa33.82■■■■□ 3
PRKCB-209ENST00000498058 SOGA1O94964 1423 aa33.79■■■■□ 3
PRKCB-209ENST00000498058 ARHGEF11O15085 1522 aa33.78■■■■□ 3
PRKCB-209ENST00000498058 CUX1P39880 1505 aa33.78■■■■□ 3
PRKCB-209ENST00000498058 FGD5Q6ZNL6 1462 aa33.76■■■■□ 3
PRKCB-209ENST00000498058 TDRD9Q8NDG6 1382 aaKnown RBP33.75■■■□□ 2.99
PRKCB-209ENST00000498058 SUPT5HO00267 1087 aaKnown RBP33.68■■■□□ 2.98
PRKCB-209ENST00000498058 FBLN2P98095 1184 aa33.66■■■□□ 2.98
PRKCB-209ENST00000498058 SNAPC4Q5SXM2 1469 aa33.59■■■□□ 2.97
PRKCB-209ENST00000498058 WDR97A6NE52 1622 aa33.57■■■□□ 2.97
PRKCB-209ENST00000498058 CYB5RLQ6IPT4 315 aa33.51■■■□□ 2.95
PRKCB-209ENST00000498058 ARAP1Q96P48 1450 aa33.48■■■□□ 2.95
PRKCB-209ENST00000498058 GRIN2BQ13224 1484 aa33.47■■■□□ 2.95
PRKCB-209ENST00000498058 MAGI1Q96QZ7 1491 aaPredicted RBP33.45■■■□□ 2.95
PRKCB-209ENST00000498058 CLASP1Q7Z460 1538 aa33.43■■■□□ 2.94
PRKCB-209ENST00000498058 CHMP7Q8WUX9 453 aaPredicted RBP33.4■■■□□ 2.94
PRKCB-209ENST00000498058 PBRM1Q86U86 1689 aa33.39■■■□□ 2.94
PRKCB-209ENST00000498058 GAPVD1Q14C86 1478 aa33.38■■■□□ 2.93
PRKCB-209ENST00000498058 ABCA10Q8WWZ4 1543 aa33.38■■■□□ 2.93
PRKCB-209ENST00000498058 SYNJ2O15056 1496 aa33.36■■■□□ 2.93
PRKCB-209ENST00000498058 ABCA5Q8WWZ7 1642 aa33.34■■■□□ 2.93
PRKCB-209ENST00000498058 SYNJ1O43426 1573 aa33.33■■■□□ 2.93
PRKCB-209ENST00000498058 BIVM-ERCC5R4GMW8 1640 aa33.22■■■□□ 2.91
PRKCB-209ENST00000498058 TOP2BQ02880 1626 aa33.2■■■□□ 2.91
PRKCB-209ENST00000498058 WRNQ14191 1432 aaPredicted RBP eCLIP33.19■■■□□ 2.95e-6■■■■■ 29.2
PRKCB-209ENST00000498058 ADAMTS12P58397 1594 aa33.08■■■□□ 2.89
PRKCB-209ENST00000498058 TRHP20396 242 aaPredicted RBP33.07■■■□□ 2.88
PRKCB-209ENST00000498058 GRIN2AQ12879 1464 aa33.06■■■□□ 2.88
PRKCB-209ENST00000498058 CEP170Q5SW79 1584 aa33■■■□□ 2.87
PRKCB-209ENST00000498058 ERCC6L2Q5T890 1561 aa32.99■■■□□ 2.87
PRKCB-209ENST00000498058 NUP160Q12769 1436 aa32.97■■■□□ 2.87
PRKCB-209ENST00000498058 FHAD1B1AJZ9 1412 aa32.94■■■□□ 2.86
PRKCB-209ENST00000498058 ERICH3Q5RHP9 1530 aa32.92■■■□□ 2.86
PRKCB-209ENST00000498058 SHROOM2Q13796 1616 aa32.83■■■□□ 2.85
PRKCB-209ENST00000498058 PRG4Q92954 1404 aaPredicted RBP32.63■■■□□ 2.81
PRKCB-209ENST00000498058 JPH4Q96JJ6 628 aa32.62■■■□□ 2.81
PRKCB-209ENST00000498058 RUSC2Q8N2Y8 1516 aa32.61■■■□□ 2.81
PRKCB-209ENST00000498058 IGF1RP08069 1367 aa32.58■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms