Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDB2O43679 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB2O43679 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LDB2O43679 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LDB2O43679 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.7■□□□□ 0.9
LDB2O43679 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 AC006015.1-201ENST00000429970 570 ntBASIC20.69■□□□□ 0.9
LDB2O43679 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.69■□□□□ 0.9
LDB2O43679 KRT18P11-201ENST00000435214 1283 ntBASIC20.69■□□□□ 0.9
LDB2O43679 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.69■□□□□ 0.9
LDB2O43679 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 AC116050.2-201ENST00000612102 1779 ntBASIC20.69■□□□□ 0.9
LDB2O43679 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LDB2O43679 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LDB2O43679 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.69■□□□□ 0.9
LDB2O43679 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.69■□□□□ 0.9
LDB2O43679 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
LDB2O43679 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.68■□□□□ 0.9
LDB2O43679 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.68■□□□□ 0.9
LDB2O43679 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
LDB2O43679 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.68■□□□□ 0.9
LDB2O43679 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 AC010536.3-201ENST00000620306 533 ntBASIC20.68■□□□□ 0.9
LDB2O43679 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LDB2O43679 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.68■□□□□ 0.9
LDB2O43679 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LDB2O43679 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LDB2O43679 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.67■□□□□ 0.9
LDB2O43679 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.67■□□□□ 0.9
LDB2O43679 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.67■□□□□ 0.9
LDB2O43679 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
LDB2O43679 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
LDB2O43679 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
LDB2O43679 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
LDB2O43679 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.67■□□□□ 0.9
LDB2O43679 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LDB2O43679 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.66■□□□□ 0.9
LDB2O43679 AL157384.1-201ENST00000445995 2473 ntBASIC20.66■□□□□ 0.9
LDB2O43679 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 TERF1P5-201ENST00000477545 1207 ntBASIC20.66■□□□□ 0.9
LDB2O43679 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LDB2O43679 MFSD11-216ENST00000590393 1141 ntBASIC20.66■□□□□ 0.9
LDB2O43679 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LDB2O43679 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.66■□□□□ 0.9
LDB2O43679 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.66■□□□□ 0.9
LDB2O43679 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.66■□□□□ 0.9
LDB2O43679 AC007225.1-201ENST00000566331 1836 ntBASIC20.66■□□□□ 0.9
LDB2O43679 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.66■□□□□ 0.9
LDB2O43679 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.66■□□□□ 0.9
LDB2O43679 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LDB2O43679 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.65■□□□□ 0.9
LDB2O43679 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LDB2O43679 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.65■□□□□ 0.9
LDB2O43679 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.65■□□□□ 0.9
LDB2O43679 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LDB2O43679 AC016769.1-201ENST00000409132 1010 ntBASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms