Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.3□□□□□ -0.282e-8■□□□□ 8.2
CDC40O60508 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC13.13□□□□□ -0.312e-8■□□□□ 8.2
CDC40O60508 SLC17A9-203ENST00000411611 565 ntTSL 212.94□□□□□ -0.341e-6■□□□□ 8.2
CDC40O60508 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.342e-8■□□□□ 8.2
CDC40O60508 RNF4-208ENST00000507247 616 ntTSL 1 (best)12.9□□□□□ -0.341e-6■□□□□ 8.2
CDC40O60508 RNF4-202ENST00000502316 855 ntTSL 212.87□□□□□ -0.351e-6■□□□□ 8.2
CDC40O60508 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.381e-6■□□□□ 8.2
CDC40O60508 RNF4-215ENST00000511843 586 ntTSL 512.28□□□□□ -0.441e-6■□□□□ 8.2
CDC40O60508 RNF4-201ENST00000314289 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.61e-6■□□□□ 8.2
CDC40O60508 RNF4-222ENST00000541204 2796 ntTSL 1 (best) BASIC11.27□□□□□ -0.611e-6■□□□□ 8.2
CDC40O60508 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC10.88□□□□□ -0.671e-6■□□□□ 8.2
CDC40O60508 U2SURP-215ENST00000493782 588 ntTSL 1 (best)10.86□□□□□ -0.671e-6■□□□□ 8.2
CDC40O60508 RNF4-218ENST00000513284 517 ntTSL 410.49□□□□□ -0.731e-6■□□□□ 8.2
CDC40O60508 RNF4-212ENST00000509258 893 ntTSL 1 (best) BASIC10.1□□□□□ -0.791e-6■□□□□ 8.2
CDC40O60508 HPRT1-201ENST00000298556 1407 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.851e-6■□□□□ 8.2
CDC40O60508 EML4-202ENST00000401738 3797 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.855e-11■□□□□ 8.2
CDC40O60508 RNF4-221ENST00000513643 516 ntTSL 38.85□□□□□ -0.991e-6■□□□□ 8.2
CDC40O60508 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -12e-8■□□□□ 8.2
CDC40O60508 TNS1-202ENST00000310858 1792 ntTSL 1 (best) BASIC8.19□□□□□ -1.11e-6■□□□□ 8.2
CDC40O60508 RER1-205ENST00000443438 540 ntTSL 27.78□□□□□ -1.161e-6■□□□□ 8.2
CDC40O60508 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.252e-8■□□□□ 8.2
CDC40O60508 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.351e-6■□□□□ 8.2
CDC40O60508 U2SURP-211ENST00000488497 3557 ntTSL 1 (best)6.07□□□□□ -1.441e-6■□□□□ 8.2
CDC40O60508 EML4-204ENST00000406175 4622 ntTSL 1 (best)5.8□□□□□ -1.485e-11■□□□□ 8.2
CDC40O60508 HPRT1-203ENST00000475720 599 ntTSL 34.6□□□□□ -1.671e-6■□□□□ 8.2
CDC40O60508 HNRNPUL2-202ENST00000540127 439 ntTSL 34.23□□□□□ -1.731e-6■□□□□ 8.2
CDC40O60508 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.731e-6■□□□□ 8.2
CDC40O60508 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.97□□□□□ -1.771e-6■□□□□ 8.2
CDC40O60508 EML4-207ENST00000480320 1932 ntTSL 23.42□□□□□ -1.865e-11■□□□□ 8.2
CDC40O60508 U2SURP-204ENST00000465175 571 ntTSL 43.34□□□□□ -1.871e-6■□□□□ 8.2
CDC40O60508 U2SURP-217ENST00000600150 725 ntTSL 53.34□□□□□ -1.871e-6■□□□□ 8.2
CDC40O60508 U2SURP-210ENST00000485374 470 ntTSL 42.82□□□□□ -1.961e-6■□□□□ 8.2
CDC40O60508 U2SURP-206ENST00000470400 881 ntTSL 32.64□□□□□ -1.991e-6■□□□□ 8.2
CDC40O60508 U2SURP-201ENST00000461591 1580 ntTSL 22.53□□□□□ -21e-6■□□□□ 8.2
CDC40O60508 U2SURP-213ENST00000491827 824 ntTSL 32.37□□□□□ -2.031e-6■□□□□ 8.2
CDC40O60508 U2SURP-203ENST00000463563 4364 ntTSL 22.32□□□□□ -2.041e-6■□□□□ 8.2
CDC40O60508 RPS6KA3-203ENST00000457145 804 ntTSL 22.19□□□□□ -2.061e-6■□□□□ 8.2
CDC40O60508 EIF4A2-223ENST00000494445 629 ntTSL 28.38□□□□□ -1.075e-7■□□□□ 8.2
CDC40O60508 EIF4A2-225ENST00000496382 460 ntTSL 1 (best)5.7□□□□□ -1.55e-7■□□□□ 8.2
CDC40O60508 EIF4A2-222ENST00000492144 993 ntTSL 24.83□□□□□ -1.645e-7■□□□□ 8.2
CDC40O60508 EIF4A2-226ENST00000497177 849 ntTSL 54.78□□□□□ -1.645e-7■□□□□ 8.2
CDC40O60508 EIF4A2-216ENST00000468362 1356 ntTSL 24.4□□□□□ -1.715e-7■□□□□ 8.2
CDC40O60508 EIF4A2-209ENST00000461021 575 ntTSL 24.08□□□□□ -1.765e-7■□□□□ 8.2
CDC40O60508 RSRP1-222ENST00000570063 1821 ntTSL 516.19■□□□□ 0.181e-9■□□□□ 8.1
CDC40O60508 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.051e-9■□□□□ 8.1
CDC40O60508 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.091e-9■□□□□ 8.1
CDC40O60508 RSRP1-217ENST00000568254 2013 ntTSL 1 (best)14.19□□□□□ -0.141e-9■□□□□ 8.1
CDC40O60508 RSRP1-212ENST00000565733 772 ntTSL 313.14□□□□□ -0.311e-9■□□□□ 8.1
CDC40O60508 RSRP1-216ENST00000568212 570 ntTSL 412.79□□□□□ -0.361e-9■□□□□ 8.1
CDC40O60508 RSRP1-204ENST00000473314 3034 ntTSL 212.69□□□□□ -0.381e-9■□□□□ 8.1
CDC40O60508 RSRP1-207ENST00000498238 2941 ntTSL 211.33□□□□□ -0.61e-9■□□□□ 8.1
CDC40O60508 RSRP1-205ENST00000475766 525 ntTSL 410.48□□□□□ -0.731e-9■□□□□ 8.1
CDC40O60508 RSRP1-206ENST00000491378 487 ntTSL 35.91□□□□□ -1.461e-9■□□□□ 8.1
CDC40O60508 RSRP1-213ENST00000566395 824 ntTSL 34.52□□□□□ -1.691e-9■□□□□ 8.1
CDC40O60508 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.27■□□□□ 0.844e-7■□□□□ 8.1
CDC40O60508 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.089e-11■□□□□ 8.1
CDC40O60508 CDK8-205ENST00000536792 3032 ntTSL 1 (best)14.4□□□□□ -0.19e-11■□□□□ 8.1
CDC40O60508 NPC1L1-204ENST00000546276 4826 ntTSL 1 (best) BASIC11.57□□□□□ -0.563e-8■□□□□ 8
CDC40O60508 NPC1L1-201ENST00000289547 5048 ntTSL 1 (best) BASIC10.88□□□□□ -0.673e-8■□□□□ 8
CDC40O60508 NPC1L1-202ENST00000381160 4141 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.783e-8■□□□□ 8
CDC40O60508 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.435e-13■□□□□ 8
CDC40O60508 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.265e-13■□□□□ 8
CDC40O60508 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.63□□□□□ -0.075e-13■□□□□ 8
CDC40O60508 SERPINF2-205ENST00000453723 838 ntTSL 313.66□□□□□ -0.225e-13■□□□□ 8
Retrieved 64 of 5,364 protein–RNA pairs in 28 ms