RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 NISCHQ9Y2I1 1504 aa29.63■■■□□ 2.33
RNF4-216ENST00000511859 ABCC9O60706 1549 aa27.31■■□□□ 1.96
RNF4-216ENST00000511859 CCDC180Q9P1Z9 1646 aa26.81■■□□□ 1.88
RNF4-216ENST00000511859 DNAJC5BQ9UF47 199 aa26.15■■□□□ 1.78
RNF4-216ENST00000511859 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
RNF4-216ENST00000511859 NACADO15069 1562 aa25.51■■□□□ 1.68
RNF4-216ENST00000511859 PABPN1Q86U42 306 aaKnown RBP eCLIP25.39■■□□□ 1.65
RNF4-216ENST00000511859 DCAF8L2P0C7V8 631 aa25.31■■□□□ 1.64
RNF4-216ENST00000511859 UNC13AQ9UPW8 1703 aa25.18■■□□□ 1.62
RNF4-216ENST00000511859 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
RNF4-216ENST00000511859 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
RNF4-216ENST00000511859 SHROOM4Q9ULL8 1493 aa24.7■■□□□ 1.55
RNF4-216ENST00000511859 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.54
RNF4-216ENST00000511859 CC2D2AQ9P2K1 1620 aa24.66■■□□□ 1.54
RNF4-216ENST00000511859 EIF4G1Q04637 1599 aaKnown RBP24.48■■□□□ 1.51
RNF4-216ENST00000511859 DCAF1Q9Y4B6 1507 aa24.48■■□□□ 1.51
RNF4-216ENST00000511859 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
RNF4-216ENST00000511859 ZCCHC6Q5VYS8 1495 aaKnown RBP24.41■■□□□ 1.5
RNF4-216ENST00000511859 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
RNF4-216ENST00000511859 CUX2O14529 1486 aa23.81■■□□□ 1.4
RNF4-216ENST00000511859 ERCC6Q03468 1493 aa23.65■■□□□ 1.38
RNF4-216ENST00000511859 NCAPD3P42695 1498 aa23.58■■□□□ 1.37
RNF4-216ENST00000511859 ATAD2BQ9ULI0 1458 aa23.39■■□□□ 1.33
RNF4-216ENST00000511859 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
RNF4-216ENST00000511859 HMGXB3Q12766 1538 aa23.3■■□□□ 1.32
RNF4-216ENST00000511859 NESP48681 1621 aa23.3■■□□□ 1.32
RNF4-216ENST00000511859 SMARCA4P51532 1647 aa23.21■■□□□ 1.31
RNF4-216ENST00000511859 THOC2Q8NI27 1593 aaKnown RBP23.16■■□□□ 1.3
RNF4-216ENST00000511859 BAZ1BQ9UIG0 1483 aaKnown RBP23.12■■□□□ 1.29
RNF4-216ENST00000511859 TRIM41Q8WV44 630 aa23.11■■□□□ 1.29
RNF4-216ENST00000511859 LAMC3Q9Y6N6 1575 aa23.11■■□□□ 1.29
RNF4-216ENST00000511859 BAZ1AQ9NRL2 1556 aaPredicted RBP23.04■■□□□ 1.28
RNF4-216ENST00000511859 PDS5BQ9NTI5 1447 aa23.03■■□□□ 1.28
RNF4-216ENST00000511859 PEG3Q9GZU2 1588 aa23.01■■□□□ 1.27
RNF4-216ENST00000511859 KIF21AQ7Z4S6 1674 aa22.98■■□□□ 1.27
RNF4-216ENST00000511859 CADPSQ9ULU8 1353 aa22.84■■□□□ 1.25
RNF4-216ENST00000511859 MRC2Q9UBG0 1479 aa22.8■■□□□ 1.24
RNF4-216ENST00000511859 MROH2BQ7Z745 1585 aa22.79■■□□□ 1.24
RNF4-216ENST00000511859 WDR62O43379 1518 aa22.75■■□□□ 1.23
RNF4-216ENST00000511859 OSCARQ8IYS5 282 aa22.72■■□□□ 1.23
RNF4-216ENST00000511859 CEP164Q9UPV0 1460 aa22.6■■□□□ 1.21
RNF4-216ENST00000511859 FANCD2Q9BXW9 1451 aa22.54■■□□□ 1.2
RNF4-216ENST00000511859 WIZO95785 1651 aa22.49■■□□□ 1.19
RNF4-216ENST00000511859 CFTRP13569 1480 aa22.44■■□□□ 1.18
RNF4-216ENST00000511859 URB2Q14146 1524 aaKnown RBP22.36■■□□□ 1.17
RNF4-216ENST00000511859 RIMBP3CA6NJZ7 1639 aa22.36■■□□□ 1.17
RNF4-216ENST00000511859 RIMBP3BA6NNM3 1639 aa22.36■■□□□ 1.17
RNF4-216ENST00000511859 RIMBP3Q9UFD9 1639 aa22.36■■□□□ 1.17
RNF4-216ENST00000511859 ARHGEF11O15085 1522 aa22.23■■□□□ 1.15
RNF4-216ENST00000511859 IFT140Q96RY7 1462 aa22.19■■□□□ 1.14
RNF4-216ENST00000511859 CYB5RLQ6IPT4 315 aa22.18■■□□□ 1.14
RNF4-216ENST00000511859 TOP2AP11388 1531 aaKnown RBP22.17■■□□□ 1.14
RNF4-216ENST00000511859 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
RNF4-216ENST00000511859 RSF1Q96T23 1441 aaPredicted RBP22.16■■□□□ 1.14
RNF4-216ENST00000511859 PRDM2Q13029 1718 aa22.14■■□□□ 1.14
RNF4-216ENST00000511859 TRHP20396 242 aaPredicted RBP22.11■■□□□ 1.13
RNF4-216ENST00000511859 TOPBP1Q92547 1522 aa22.04■■□□□ 1.12
RNF4-216ENST00000511859 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
RNF4-216ENST00000511859 EIF4G3O43432 1585 aaKnown RBP21.99■■□□□ 1.11
RNF4-216ENST00000511859 ARAP1Q96P48 1450 aa21.97■■□□□ 1.11
RNF4-216ENST00000511859 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
RNF4-216ENST00000511859 CHD1O14646 1710 aa21.95■■□□□ 1.1
RNF4-216ENST00000511859 FBLN2P98095 1184 aa21.94■■□□□ 1.1
RNF4-216ENST00000511859 AQRO60306 1485 aaKnown RBP eCLIP21.94■■□□□ 1.17e-8■■■■■ 35.3
RNF4-216ENST00000511859 DNMBPQ6XZF7 1577 aa21.9■■□□□ 1.1
RNF4-216ENST00000511859 AEBP2Q6ZN18 517 aaPredicted RBP21.89■■□□□ 1.1
RNF4-216ENST00000511859 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
RNF4-216ENST00000511859 POLA1P09884 1462 aaPredicted RBP21.78■■□□□ 1.08
RNF4-216ENST00000511859 SOGA1O94964 1423 aa21.72■■□□□ 1.07
RNF4-216ENST00000511859 TDRD9Q8NDG6 1382 aaKnown RBP21.72■■□□□ 1.07
RNF4-216ENST00000511859 CHMP7Q8WUX9 453 aaPredicted RBP21.72■■□□□ 1.07
RNF4-216ENST00000511859 RAD54L2Q9Y4B4 1467 aa21.7■■□□□ 1.06
RNF4-216ENST00000511859 CLASP1Q7Z460 1538 aa21.69■■□□□ 1.06
RNF4-216ENST00000511859 WDR97A6NE52 1622 aa21.67■■□□□ 1.06
RNF4-216ENST00000511859 SYNJ1O43426 1573 aa21.66■■□□□ 1.06
RNF4-216ENST00000511859 SNAPC4Q5SXM2 1469 aa21.66■■□□□ 1.06
RNF4-216ENST00000511859 MAGI1Q96QZ7 1491 aaPredicted RBP21.63■■□□□ 1.05
RNF4-216ENST00000511859 GRIN2BQ13224 1484 aa21.57■■□□□ 1.04
RNF4-216ENST00000511859 SYNJ2O15056 1496 aa21.56■■□□□ 1.04
RNF4-216ENST00000511859 FGD5Q6ZNL6 1462 aa21.56■■□□□ 1.04
RNF4-216ENST00000511859 GAPVD1Q14C86 1478 aa21.54■■□□□ 1.04
RNF4-216ENST00000511859 CUX1P39880 1505 aa21.44■■□□□ 1.02
RNF4-216ENST00000511859 PBRM1Q86U86 1689 aa21.39■■□□□ 1.02
RNF4-216ENST00000511859 ABCA10Q8WWZ4 1543 aa21.31■■□□□ 1
RNF4-216ENST00000511859 ERCC6L2Q5T890 1561 aa21.29■■□□□ 1
RNF4-216ENST00000511859 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
RNF4-216ENST00000511859 GRIN2AQ12879 1464 aa21.27■■□□□ 1
RNF4-216ENST00000511859 CEP170Q5SW79 1584 aa21.24■□□□□ 0.99
RNF4-216ENST00000511859 NUP160Q12769 1436 aa21.23■□□□□ 0.99
RNF4-216ENST00000511859 KIF13AQ9H1H9 1805 aa21.2■□□□□ 0.98
RNF4-216ENST00000511859 SHROOM2Q13796 1616 aa21.18■□□□□ 0.98
RNF4-216ENST00000511859 ADAMTS12P58397 1594 aa21.15■□□□□ 0.98
RNF4-216ENST00000511859 WRNQ14191 1432 aaPredicted RBP eCLIP21.15■□□□□ 0.982e-6■■■■■ 29.9
RNF4-216ENST00000511859 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.97
RNF4-216ENST00000511859 FAM69CQ0P6D2 419 aa21.1■□□□□ 0.97
RNF4-216ENST00000511859 JPH4Q96JJ6 628 aa21.1■□□□□ 0.97
RNF4-216ENST00000511859 NPM1P06748 294 aaKnown RBP eCLIP21.09■□□□□ 0.97
RNF4-216ENST00000511859 PRG4Q92954 1404 aaPredicted RBP21.08■□□□□ 0.97
RNF4-216ENST00000511859 ABCC10Q5T3U5 1492 aa21.06■□□□□ 0.96
RNF4-216ENST00000511859 ERICH3Q5RHP9 1530 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms