Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.13■□□□□ 0.33
TMEM56-RWDD3S4R434 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 AC020907.5-201ENST00000624372 1936 ntBASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 AK3-203ENST00000447596 705 ntTSL 2 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TMEM56-RWDD3S4R434 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 AC007225.1-201ENST00000566331 1836 ntBASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TMEM56-RWDD3S4R434 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 UNC93B8-201ENST00000511903 705 ntBASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 AC092171.4-201ENST00000609130 632 ntBASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TMEM56-RWDD3S4R434 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 AP005435.1-201ENST00000529293 1178 ntBASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC17.09■□□□□ 0.33
TMEM56-RWDD3S4R434 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TMEM56-RWDD3S4R434 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
TMEM56-RWDD3S4R434 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TMEM56-RWDD3S4R434 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.08■□□□□ 0.33
TMEM56-RWDD3S4R434 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms