Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC32.48■■■□□ 2.79
COL17A1Q9UMD9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 CD177P1-201ENST00000606252 935 ntBASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL17A1Q9UMD9 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 KRT17P2-201ENST00000300992 1314 ntBASIC32.46■■■□□ 2.79
COL17A1Q9UMD9 AC142381.3-201ENST00000568208 1670 ntBASIC32.45■■■□□ 2.79
COL17A1Q9UMD9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC32.45■■■□□ 2.79
COL17A1Q9UMD9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.79
COL17A1Q9UMD9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC32.45■■■□□ 2.79
COL17A1Q9UMD9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC32.45■■■□□ 2.79
COL17A1Q9UMD9 AL049637.2-201ENST00000641778 930 ntBASIC32.45■■■□□ 2.79
COL17A1Q9UMD9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
COL17A1Q9UMD9 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 DHDH-203ENST00000522614 776 ntTSL 5 BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 AL355075.4-201ENST00000554988 638 ntBASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC32.44■■■□□ 2.78
COL17A1Q9UMD9 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 MED17-227ENST00000640521 2047 ntTSL 5 BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
COL17A1Q9UMD9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 AC138932.3-201ENST00000567634 1902 ntBASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 AP004607.7-201ENST00000527152 1677 ntBASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 ARMC10P1-201ENST00000313754 855 ntBASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC32.42■■■□□ 2.78
COL17A1Q9UMD9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL17A1Q9UMD9 AC243732.1-201ENST00000612648 864 ntBASIC32.41■■■□□ 2.78
COL17A1Q9UMD9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL17A1Q9UMD9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL17A1Q9UMD9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC32.39■■■□□ 2.78
COL17A1Q9UMD9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL17A1Q9UMD9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms