Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.6■□□□□ 0.57
MMP28Q9H239 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
MMP28Q9H239 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MMP28Q9H239 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
MMP28Q9H239 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.59■□□□□ 0.57
MMP28Q9H239 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.59■□□□□ 0.57
MMP28Q9H239 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MMP28Q9H239 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
MMP28Q9H239 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MMP28Q9H239 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MMP28Q9H239 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MMP28Q9H239 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.58■□□□□ 0.57
MMP28Q9H239 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
MMP28Q9H239 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MMP28Q9H239 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MMP28Q9H239 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.58■□□□□ 0.57
MMP28Q9H239 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
MMP28Q9H239 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.58■□□□□ 0.56
MMP28Q9H239 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
MMP28Q9H239 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.58■□□□□ 0.56
MMP28Q9H239 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
MMP28Q9H239 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.58■□□□□ 0.56
MMP28Q9H239 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.58■□□□□ 0.56
MMP28Q9H239 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
MMP28Q9H239 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MMP28Q9H239 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.57■□□□□ 0.56
MMP28Q9H239 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
MMP28Q9H239 MIR6722-201ENST00000617286 78 ntBASIC18.57■□□□□ 0.56
MMP28Q9H239 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MMP28Q9H239 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.57■□□□□ 0.56
MMP28Q9H239 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.57■□□□□ 0.56
MMP28Q9H239 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MMP28Q9H239 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.56■□□□□ 0.56
MMP28Q9H239 AC019069.1-201ENST00000610008 1333 ntBASIC18.56■□□□□ 0.56
MMP28Q9H239 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.56■□□□□ 0.56
MMP28Q9H239 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
MMP28Q9H239 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
MMP28Q9H239 MTDHP2-201ENST00000601468 714 ntBASIC18.56■□□□□ 0.56
MMP28Q9H239 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
MMP28Q9H239 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.56■□□□□ 0.56
MMP28Q9H239 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
MMP28Q9H239 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MMP28Q9H239 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.55■□□□□ 0.56
MMP28Q9H239 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms