Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 AC068587.7-201ENST00000641602 218 ntBASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.64■□□□□ 0.57
RHBDD3Q9Y3P4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 UNC93B3-201ENST00000308076 687 ntBASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 AC079089.2-201ENST00000531211 1277 ntBASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RHBDD3Q9Y3P4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 SLC47A1P1-202ENST00000449666 945 ntBASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.62■□□□□ 0.57
RHBDD3Q9Y3P4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 AC087239.1-201ENST00000622671 572 ntBASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.61■□□□□ 0.57
RHBDD3Q9Y3P4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 Z98882.1-201ENST00000622160 2253 ntBASIC18.6■□□□□ 0.57
RHBDD3Q9Y3P4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 AC010141.3-201ENST00000456659 717 ntBASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 MIR4767-201ENST00000582827 78 ntBASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 AL136162.1-201ENST00000607711 1078 ntBASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
RHBDD3Q9Y3P4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms