Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
BLOC1S4Q9NUP1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
BLOC1S4Q9NUP1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
BLOC1S4Q9NUP1 CLDN5-201ENST00000403084 2357 ntBASIC23.83■■□□□ 1.4
BLOC1S4Q9NUP1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 AC007375.3-201ENST00000600936 2314 ntBASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
BLOC1S4Q9NUP1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
BLOC1S4Q9NUP1 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 AC027612.3-201ENST00000413684 1047 ntBASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
BLOC1S4Q9NUP1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
BLOC1S4Q9NUP1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 AC026310.3-201ENST00000625186 2373 ntBASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.78■■□□□ 1.4
BLOC1S4Q9NUP1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 AC104564.3-201ENST00000582367 638 ntBASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.77■■□□□ 1.4
BLOC1S4Q9NUP1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.76■■□□□ 1.39
BLOC1S4Q9NUP1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
BLOC1S4Q9NUP1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
BLOC1S4Q9NUP1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
BLOC1S4Q9NUP1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
BLOC1S4Q9NUP1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms