Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAV40A0A0B4J280 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 MYCNOS-205ENST00000641950 531 ntBASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 AC139530.1-201ENST00000575312 1977 ntBASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV40A0A0B4J280 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 AC010141.2-201ENST00000452426 721 ntBASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV40A0A0B4J280 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 CROCCP5-201ENST00000436658 830 ntBASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 AC138907.5-202ENST00000569484 235 ntBASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV40A0A0B4J280 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV40A0A0B4J280 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms