Protein–RNA interactions for Protein: P53549

RPT4, 26S proteasome subunit RPT4, yeastyeast

Known RBP Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPT4P53549 YGR012WYGR012W 1182 nt11.83□□□□□ -0.52
RPT4P53549 TSC10YBR265W 963 nt11.81□□□□□ -0.52
RPT4P53549 RIB3YDR487C 627 nt11.8□□□□□ -0.52
RPT4P53549 YLR349WYLR349W 507 nt11.79□□□□□ -0.52
RPT4P53549 YNR029CYNR029C 1290 nt11.79□□□□□ -0.52
RPT4P53549 NRT1YOR071C 1797 nt11.79□□□□□ -0.52
RPT4P53549 STR3YGL184C 1398 nt11.79□□□□□ -0.52
RPT4P53549 STE4YOR212W 1272 nt11.78□□□□□ -0.52
RPT4P53549 PRO1YDR300C 1287 nt11.77□□□□□ -0.53
RPT4P53549 DUS1YML080W 1272 nt11.76□□□□□ -0.53
RPT4P53549 RPM1RPM1 483 nt11.76□□□□□ -0.53
RPT4P53549 RDN18-1RDN18-1 1800 nt11.75□□□□□ -0.53
RPT4P53549 RDN18-2RDN18-2 1800 nt11.75□□□□□ -0.53
RPT4P53549 AQY2YLL052C 450 nt11.75□□□□□ -0.53
RPT4P53549 YML089CYML089C 369 nt11.75□□□□□ -0.53
RPT4P53549 TIF6YPR016C 738 nt11.75□□□□□ -0.53
RPT4P53549 YLR279WYLR279W 390 nt11.74□□□□□ -0.53
RPT4P53549 LSC2YGR244C 1284 nt11.73□□□□□ -0.53
RPT4P53549 MET28YIR017C 564 nt11.71□□□□□ -0.53
RPT4P53549 FUN14YAL008W 597 nt11.71□□□□□ -0.53
RPT4P53549 MSB4YOL112W 1479 nt11.69□□□□□ -0.54
RPT4P53549 ATG15YCR068W 1563 nt11.68□□□□□ -0.54
RPT4P53549 YJL195CYJL195C 702 nt11.68□□□□□ -0.54
RPT4P53549 ADH1YOL086C 1047 nt11.65□□□□□ -0.54
RPT4P53549 YCL074WYCL074W 927 nt11.64□□□□□ -0.55
RPT4P53549 ADH7YCR105W 1086 nt11.64□□□□□ -0.55
RPT4P53549 ARP6YLR085C 1317 nt11.61□□□□□ -0.55
RPT4P53549 PAU15YIR041W 375 nt11.6□□□□□ -0.55
RPT4P53549 YPL222C-AYPL222C-A 246 nt11.6□□□□□ -0.55
RPT4P53549 FIT3YOR383C 615 nt11.58□□□□□ -0.56
RPT4P53549 GAP1YKR039W 1809 nt11.56□□□□□ -0.56
RPT4P53549 YPI1YFR003C 468 nt11.55□□□□□ -0.56
RPT4P53549 LOT5YKL183W 921 nt11.52□□□□□ -0.57
RPT4P53549 GND1YHR183W 1470 nt11.51□□□□□ -0.57
RPT4P53549 GPN2YOR262W 1044 nt11.51□□□□□ -0.57
RPT4P53549 AAC1YMR056C 930 nt11.5□□□□□ -0.57
RPT4P53549 YEL008WYEL008W 381 nt11.49□□□□□ -0.57
RPT4P53549 PLB1YMR008C 1995 nt11.48□□□□□ -0.57
RPT4P53549 ZTA1YBR046C 1005 nt11.47□□□□□ -0.57
RPT4P53549 RTN2YDL204W 1182 nt11.45□□□□□ -0.58
RPT4P53549 FUR4YBR021W 1902 nt11.43□□□□□ -0.58
RPT4P53549 APT2YDR441C 546 nt11.43□□□□□ -0.58
RPT4P53549 CPD1YGR247W 720 nt11.43□□□□□ -0.58
RPT4P53549 DIF1YLR437C 402 nt11.43□□□□□ -0.58
RPT4P53549 ESS1YJR017C 513 nt11.41□□□□□ -0.58
RPT4P53549 YAR028WYAR028W 705 nt11.41□□□□□ -0.58
RPT4P53549 MTG2YHR168W 1557 nt11.4□□□□□ -0.58
RPT4P53549 ALP1YNL270C 1722 nt11.4□□□□□ -0.58
RPT4P53549 SMM1YNR015W 1155 nt11.39□□□□□ -0.59
RPT4P53549 AKR2YOR034C 2250 nt11.39□□□□□ -0.59
RPT4P53549 tS(GCU)LtS(GCU)L 80 nt11.35□□□□□ -0.59
RPT4P53549 FCY21YER060W 1587 nt11.35□□□□□ -0.59
RPT4P53549 UTR1YJR049C 1593 nt11.34□□□□□ -0.59
RPT4P53549 RIB2YOL066C 1776 nt11.33□□□□□ -0.6
RPT4P53549 LSB3YFR024C-A 1380 nt11.31□□□□□ -0.6
RPT4P53549 HXT12YIL170W 1374 nt11.25□□□□□ -0.61
RPT4P53549 UGA4YDL210W 1716 nt11.24□□□□□ -0.61
RPT4P53549 YGR259CYGR259C 441 nt11.24□□□□□ -0.61
RPT4P53549 PRY1YJL079C 900 nt11.24□□□□□ -0.61
RPT4P53549 YKR005CYKR005C 1578 nt11.24□□□□□ -0.61
RPT4P53549 YER190C-AYER190C-A 576 nt11.21□□□□□ -0.61
RPT4P53549 YGR296C-AYGR296C-A 576 nt11.21□□□□□ -0.61
RPT4P53549 YML133W-AYML133W-A 576 nt11.21□□□□□ -0.61
RPT4P53549 YNL339W-AYNL339W-A 576 nt11.21□□□□□ -0.61
RPT4P53549 YPL283W-AYPL283W-A 576 nt11.21□□□□□ -0.61
RPT4P53549 SEN2YLR105C 1134 nt11.2□□□□□ -0.62
RPT4P53549 PUP1YOR157C 786 nt11.2□□□□□ -0.62
RPT4P53549 YJL225CYJL225C 5277 nt11.2□□□□□ -0.62
RPT4P53549 PGC1YPL206C 966 nt11.19□□□□□ -0.62
RPT4P53549 ALD4YOR374W 1560 nt11.18□□□□□ -0.62
RPT4P53549 VRG4YGL225W 1014 nt11.17□□□□□ -0.62
RPT4P53549 SED1YDR077W 1017 nt11.16□□□□□ -0.62
RPT4P53549 NVJ2YPR091C 2313 nt11.16□□□□□ -0.62
RPT4P53549 PRM5YIL117C 957 nt11.15□□□□□ -0.62
RPT4P53549 YJL055WYJL055W 738 nt11.15□□□□□ -0.62
RPT4P53549 NAP1YKR048C 1254 nt11.14□□□□□ -0.63
RPT4P53549 YBR232CYBR232C 360 nt11.14□□□□□ -0.63
RPT4P53549 PAU5YFL020C 369 nt11.13□□□□□ -0.63
RPT4P53549 PAC11YDR488C 1602 nt11.11□□□□□ -0.63
RPT4P53549 SAM35YHR083W 990 nt11.09□□□□□ -0.63
RPT4P53549 YPL251WYPL251W 303 nt11.09□□□□□ -0.63
RPT4P53549 CCT5YJR064W 1689 nt11.08□□□□□ -0.64
RPT4P53549 PRP4YPR178W 1398 nt11.08□□□□□ -0.64
RPT4P53549 LIP1YMR298W 453 nt11.08□□□□□ -0.64
RPT4P53549 CSM1YCR086W 573 nt11.05□□□□□ -0.64
RPT4P53549 STP3YLR375W 1032 nt11.05□□□□□ -0.64
RPT4P53549 HSP60YLR259C 1719 nt11.04□□□□□ -0.64
RPT4P53549 YJL064WYJL064W 396 nt11.03□□□□□ -0.64
RPT4P53549 DBP1YPL119C 1854 nt11.03□□□□□ -0.64
RPT4P53549 YBL086CYBL086C 1401 nt11.02□□□□□ -0.64
RPT4P53549 DPS1YLL018C 1674 nt11.01□□□□□ -0.65
RPT4P53549 MEP3YPR138C 1470 nt11□□□□□ -0.65
RPT4P53549 YMR103CYMR103C 363 nt10.99□□□□□ -0.65
RPT4P53549 PAU19YMR325W 375 nt10.99□□□□□ -0.65
RPT4P53549 LEU9YOR108W 1815 nt10.98□□□□□ -0.65
RPT4P53549 BRR1YPR057W 1026 nt10.98□□□□□ -0.65
RPT4P53549 GAL3YDR009W 1563 nt10.98□□□□□ -0.65
RPT4P53549 YJL118WYJL118W 660 nt10.97□□□□□ -0.65
RPT4P53549 BMT6YLR063W 1098 nt10.96□□□□□ -0.65
RPT4P53549 THI72YOR192C 1800 nt10.95□□□□□ -0.66
Retrieved 100 of 7,029 protein–RNA pairs in 8.6 ms