Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 KRT18P5-201ENST00000436075 1291 ntBASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 C1orf229-201ENST00000623686 2258 ntBASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 LINC00526-201ENST00000581067 1875 ntBASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHA1Q9Y5I3 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PCDHA1Q9Y5I3 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC24.89■■□□□ 1.58
PCDHA1Q9Y5I3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC24.89■■□□□ 1.58
PCDHA1Q9Y5I3 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.89■■□□□ 1.58
PCDHA1Q9Y5I3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.89■■□□□ 1.58
PCDHA1Q9Y5I3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
PCDHA1Q9Y5I3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
PCDHA1Q9Y5I3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
PCDHA1Q9Y5I3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 OR7E47P-201ENST00000546390 1422 ntBASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHA1Q9Y5I3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
PCDHA1Q9Y5I3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 NTF6G-201ENST00000591094 616 ntBASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
PCDHA1Q9Y5I3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
PCDHA1Q9Y5I3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.84■■□□□ 1.57
PCDHA1Q9Y5I3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms