Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.39■■□□□ 1.33
LRRC53A6NM62 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.39■■□□□ 1.33
LRRC53A6NM62 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LRRC53A6NM62 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LRRC53A6NM62 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
LRRC53A6NM62 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.39■■□□□ 1.33
LRRC53A6NM62 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC53A6NM62 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC53A6NM62 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 AC099791.2-201ENST00000605725 427 ntBASIC23.38■■□□□ 1.33
LRRC53A6NM62 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC53A6NM62 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
LRRC53A6NM62 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.38■■□□□ 1.33
LRRC53A6NM62 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.37■■□□□ 1.33
LRRC53A6NM62 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRC53A6NM62 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRC53A6NM62 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.37■■□□□ 1.33
LRRC53A6NM62 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRC53A6NM62 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.37■■□□□ 1.33
LRRC53A6NM62 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
LRRC53A6NM62 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC53A6NM62 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC53A6NM62 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC53A6NM62 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC53A6NM62 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC53A6NM62 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LRRC53A6NM62 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.36■■□□□ 1.33
LRRC53A6NM62 GOLGA2P6-201ENST00000340929 2049 ntBASIC23.35■■□□□ 1.33
LRRC53A6NM62 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRC53A6NM62 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC53A6NM62 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRC53A6NM62 AC244015.2-201ENST00000616358 1861 ntBASIC23.35■■□□□ 1.33
LRRC53A6NM62 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.35■■□□□ 1.33
LRRC53A6NM62 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC53A6NM62 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC53A6NM62 GUSBP5-201ENST00000418136 578 ntBASIC23.35■■□□□ 1.33
LRRC53A6NM62 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC23.35■■□□□ 1.33
LRRC53A6NM62 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
LRRC53A6NM62 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.35■■□□□ 1.33
LRRC53A6NM62 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC53A6NM62 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC53A6NM62 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LRRC53A6NM62 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
LRRC53A6NM62 GATM-206ENST00000558336 1522 ntTSL 2 BASIC23.34■■□□□ 1.33
LRRC53A6NM62 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.34■■□□□ 1.33
LRRC53A6NM62 AL356740.2-201ENST00000601559 647 ntBASIC23.34■■□□□ 1.33
LRRC53A6NM62 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.34■■□□□ 1.33
LRRC53A6NM62 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.34■■□□□ 1.33
LRRC53A6NM62 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LRRC53A6NM62 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC53A6NM62 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
LRRC53A6NM62 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC53A6NM62 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.33■■□□□ 1.33
LRRC53A6NM62 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC53A6NM62 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
LRRC53A6NM62 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
LRRC53A6NM62 MIR3621-201ENST00000580529 85 ntBASIC23.33■■□□□ 1.33
LRRC53A6NM62 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.33■■□□□ 1.33
LRRC53A6NM62 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
LRRC53A6NM62 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC23.33■■□□□ 1.32
LRRC53A6NM62 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.33■■□□□ 1.32
LRRC53A6NM62 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LRRC53A6NM62 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.32■■□□□ 1.32
LRRC53A6NM62 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 174.5 ms