Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
RHBDD3Q9Y3P4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
RHBDD3Q9Y3P4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 FBXW4P1-201ENST00000426721 2239 ntBASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RHBDD3Q9Y3P4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 AL137060.1-201ENST00000618151 2648 ntBASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDD3Q9Y3P4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 RASSF1-AS1-201ENST00000629828 790 ntBASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.97■□□□□ 0.63
RHBDD3Q9Y3P4 AC004687.1-201ENST00000579003 1625 ntBASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDD3Q9Y3P4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 AC241377.3-202ENST00000626088 1088 ntBASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 AC241585.3-202ENST00000628937 1088 ntBASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 AC245100.8-202ENST00000629247 1058 ntBASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDD3Q9Y3P4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RHBDD3Q9Y3P4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RHBDD3Q9Y3P4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms